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Evidence of Interaction Between SNRPG and PRPF3

The interaction score between SNRPG and PRPF3 is 1.29.

This page provides the details about the evidence that was used to calculate the interaction Score between the two proteins

The Scores that are listed with each module are based on the interaction score where that module provides the only source of evidence. The final Score is the integration of all the sources of evidence.

FeatureEvidenceScore (?)
Gene Expression

Pearson's Correlation between SNRPG and PRPF3 = 0.53

The original expression data was collated from the NCBI GEO database. For further information about this dataset please refer to the NCBI GEO dataset GDS596.

 6.27E-3
Orthology
OrganismSNRPG OrthologuePRPF3 OrthologueExperiment
AccessionInparalog ScoreAccessionInparalog Score
bakers yeast YFL017W-A 1 YDR473C 1
  • Other
  • AffinityCaptureMS

Get References From PubMed
worm Q9N4G9 1 Q21486 1
fly Q9VXE0 1 Q9VW52 1

The Inparalog Score is calculated by InParanoid

The experiment type Other refers to techniques other than Y2H, MS, Immunoprecipitation, SurfacePlasmonResonance, XrayDiffraction, Xlinking, CompetitionBinding, Immunofluorescence, GelRetardationAssay, AffinityChromatography, InVitroBinding, InVitro, InVivo, FarWestern, pullDown, AffinityCaptureMS, EpistaticMiniArrayProfile, AffinityCaptureWestern, BiochemicalActivity, CoCrystalStructure, FRET, ReconstitutedComplex, CoLocalization, CoPurification or CoFractionation.

 0.593
Domains No domains were used in calculating likelihood of interaction N/A
Post-translational Modifications No PTMs were used in calculating likelihood of interaction
Localisation No localisation data was used in calculating likelihood of interaction
Transitive Score

The common interactors between SNRPG and PRPF3 that are considered by the Transitive module are listed below.

The Scores listed are the values used by the transitive module to calculate the final interaction Score between SNRPG andPRPF3. The values listed are therefore not the final Score value for the listed interactions.

With a Score value ≥0.025 , SNRPG has 256 interactors and PRPF3 has 74 interactors of which there are 20 common interactors.

Common InteractorName of Common InteractorScore for SNRPG-Interactor (?)Score for PRPF3-Interactor (?)
SNRPD1 SNRPD1: Small nuclear ribonucleoprotein Sm D1 2.07E3 1.49
SNRPD3 SNRPD3: Small nuclear ribonucleoprotein Sm D3 2.07E3 1.84
SNRPD2 SNRPD2, SNRPD1: Small nuclear ribonucleoprotein Sm D2 691.00 1.84
LSM4 LSM4: U6 snRNA-associated Sm-like protein LSm4 691.00 1.10
PRPF4 PRPF4, PRP4: U4/U6 small nuclear ribonucleoprotein Prp4 69.60 1.49
KIAA0788 ASCC3L1, HELIC2, KIAA0788: U5 small nuclear ribonucleoprotein 200 kDa helicase 32.60 3.05
PRP19 PRPF19, NMP200, PRP19, SNEV: Pre-mRNA-processing factor 19 25.60 1.84
SART1 SART1: U4/U6.U5 tri-snRNP-associated protein 1 3.05 1.84
LSM3 LSM3, MDS017: U6 snRNA-associated Sm-like protein LSm3 2.60 1.84
SNRPF SNRPF, PBSCF: Small nuclear ribonucleoprotein F 2.60 1.49
PRPF8 PRPF8, PRPC8: Pre-mRNA-processing-splicing factor 8 1.84 1.49
TXNL4A TXNL4A, DIM1, TXNL4: Thioredoxin-like protein 4A 1.82 1.10
LSM2 LSM2, C6orf28, G7b: U6 snRNA-associated Sm-like protein LSm2 1.22 1.10
LSM6 LSM6: U6 snRNA-associated Sm-like protein LSm6 1.22 1.84
PRPF31 PRPF31, PRP31: U4/U6 small nuclear ribonucleoprotein Prp31 1.10 3.05
PRPF6 PRPF6, C20orf14: Pre-mRNA-processing factor 6 0.890 1.49
TFIP11 TFIP11, HSPC006: Tuftelin-interacting protein 11 0.249 1.49
NULL N/A 0.119 3.01
NULL N/A 0.119 0.119
LOC119358 similar to small nuclear ribonucleoprotein D2 0.071 0.119
2.15E-3
Total Score 1.29