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Evidence of Interaction Between SNRPG and SF3A2

The interaction score between SNRPG and SF3A2 is 1.6.

This page provides the details about the evidence that was used to calculate the interaction Score between the two proteins

The Scores that are listed with each module are based on the interaction score where that module provides the only source of evidence. The final Score is the integration of all the sources of evidence.

FeatureEvidenceScore (?)
Gene Expression

Pearson's Correlation between SNRPG and SF3A2 = 0.61

The original expression data was collated from the NCBI GEO database. For further information about this dataset please refer to the NCBI GEO dataset GDS596.

7.78E-3
Orthology
OrganismSNRPG OrthologueSF3A2 OrthologueExperiment
AccessionInparalog ScoreAccessionInparalog Score
bakers yeast YFL017W-A 1 YDL043C 1
  • Other
  • AffinityCaptureMS

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worm Q9N4G9 1 Q19335 1
fly Q9VXE0 1 Q9VU15 1

The Inparalog Score is calculated by InParanoid

The experiment type Other refers to techniques other than Y2H, MS, Immunoprecipitation, SurfacePlasmonResonance, XrayDiffraction, Xlinking, CompetitionBinding, Immunofluorescence, GelRetardationAssay, AffinityChromatography, InVitroBinding, InVitro, InVivo, FarWestern, pullDown, AffinityCaptureMS, EpistaticMiniArrayProfile, AffinityCaptureWestern, BiochemicalActivity, CoCrystalStructure, FRET, ReconstitutedComplex, CoLocalization, CoPurification or CoFractionation.

0.593
Domains No domains were used in calculating likelihood of interaction N/A
Post-translational Modifications No PTMs were used in calculating likelihood of interaction
Localisation No localisation data was used in calculating likelihood of interaction
Transitive Score

The common interactors between SNRPG and SF3A2 that are considered by the Transitive module are listed below.

The Scores listed are the values used by the transitive module to calculate the final interaction Score between SNRPG andSF3A2. The values listed are therefore not the final Score value for the listed interactions.

With a Score value ≥0.025 , SNRPG has 256 interactors and SF3A2 has 56 interactors of which there are 19 common interactors.

Common InteractorName of Common InteractorScore for SNRPG-Interactor (?)Score for SF3A2-Interactor (?)
SNRPD1 SNRPD1: Small nuclear ribonucleoprotein Sm D1 2.07E3 1.49
SNRPD3 SNRPD3: Small nuclear ribonucleoprotein Sm D3 2.07E3 1.84
SNRPD2 SNRPD2, SNRPD1: Small nuclear ribonucleoprotein Sm D2 691.00 1.84
LSM4 LSM4: U6 snRNA-associated Sm-like protein LSm4 691.00 1.84
PRP19 PRPF19, NMP200, PRP19, SNEV: Pre-mRNA-processing factor 19 25.60 1.49
PLRG1 PLRG1: Pleiotropic regulator 1 6.33 0.593
SF3B3 N/A 3.89 1.49
SF3A3 SF3A3, SAP61: Splicing factor 3A subunit 3 1.84 1.79
SF3B1 SF3B1, SAP155: Splicing factor 3B subunit 1 0.890 1.10
SF3B2 SF3B2, SAP145: Splicing factor 3B subunit 2 0.593 0.143
SF3A1 SF3A1, SAP114: Splicing factor 3 subunit 1 0.412 18.70
PLK1 PLK1, PLK: Serine/threonine-protein kinase PLK1 0.354 0.593
NULL N/A 0.119 0.119
COPB2 COPB2: Coatomer subunit beta' 0.074 0.902
COPA COPA: Coatomer subunit alpha 0.074 0.902
LOC119358 similar to small nuclear ribonucleoprotein D2 0.071 0.119
PLK3 PLK3, CNK, FNK, PRK: Serine/threonine-protein kinase PLK3 0.065 0.110
REXO2 REXO2, SFN, CGI-114, SMFN: Oligoribonuclease, mitochondrial precursor 0.060 0.685
PLK2 PLK2, SNK: Serine/threonine-protein kinase PLK2 0.053 0.078
2.15E-3
Total Score 1.6