3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 0.844

Ascend tree (bring in more domains)

Classes% of representative set
undefined 33.33
Alpha and beta (a/b) 11.11
Alpha and beta (a+b) 55.56
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 33.33 0.47
Alpha and beta (a/b)
Glycinamide ribonucleotide transformylase Domain II from 3Dee 11.11 0.36
Alpha and beta (a+b)
FAD/NAD-linked reductases, dimerisation (C-terminal) domain from 3Dee 22.22 1.04
N-terminal domain of enolase & muconate-lactonizing enzyme from 3Dee 33.33 1.55

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1joa-3 [seq. related domains] Alpha and beta (a+b) FAD/NAD-linked reductases, dimerisation (C-terminal) domain
3grt-3 [seq. related domains] Alpha and beta (a+b) FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1garb-2 [seq. related domains] Alpha and beta (a/b) Glycinamide ribonucleotide transformylase Domain II
2oneb-1 [seq. related domains] Alpha and beta (a+b) N-terminal domain of enolase & muconate-lactonizing enzyme
1dtn-1 [seq. related domains] Alpha and beta (a+b) N-terminal domain of enolase & muconate-lactonizing enzyme
1mucb-1 [seq. related domains] Alpha and beta (a+b) N-terminal domain of enolase & muconate-lactonizing enzyme
2prp-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

5aop-4 [seq. related domains] undefined undefined
5aop-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk