3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.176

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Classes% of representative set
undefined 44.44
Alpha and beta (a/b) 5.56
Alpha and beta (a+b) 33.33
All beta 16.67
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 44.44 1.26
Alpha and beta (a/b)
Glycinamide ribonucleotide transformylase Domain II from 3Dee 5.56 0.36
Alpha and beta (a+b)
FAD/NAD-linked reductases, dimerisation (C-terminal) domain from 3Dee 11.11 1.04
N-terminal domain of enolase & muconate-lactonizing enzyme from 3Dee 16.67 1.55
Tetrahydrobiopterin biosynthesis enzymes from 3Dee 5.56 0.52
All beta
Barrel-sandwich hybrid from SCOP 11.11 0.89
Type I DNA topoisomerase beta barrel domain from 3Dee 5.56 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

3grt-3 [seq. related domains] Alpha and beta (a+b) FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1joa-3 [seq. related domains] Alpha and beta (a+b) FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1garb-2 [seq. related domains] Alpha and beta (a/b) Glycinamide ribonucleotide transformylase Domain II
1dtn-1 [seq. related domains] Alpha and beta (a+b) N-terminal domain of enolase & muconate-lactonizing enzyme
1mucb-1 [seq. related domains] Alpha and beta (a+b) N-terminal domain of enolase & muconate-lactonizing enzyme
2oneb-1 [seq. related domains] Alpha and beta (a+b) N-terminal domain of enolase & muconate-lactonizing enzyme
1gtqb-1 [seq. related domains] Alpha and beta (a+b) Tetrahydrobiopterin biosynthesis enzymes
5aop-4 [seq. related domains] undefined undefined
1aiph-1 [seq. related domains] undefined undefined
2prp-1 [seq. related domains] undefined undefined
1efud-1 [seq. related domains] undefined undefined
5aop-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1ecl-3 [seq. related domains] All beta Type I DNA topoisomerase beta barrel domain
1fmtb-2 [seq. related domains] undefined undefined
1poid-1 [seq. related domains] undefined undefined

Cluster 3

Descend tree into cluster 3

1hpcb-1 [seq. related domains] All beta Barrel-sandwich hybrid
2f3gb-1 [seq. related domains] All beta Barrel-sandwich hybrid
1ytfc-2 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk