3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.773

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Classes% of representative set
undefined 36.84
Small proteins 5.26
All alpha 57.89
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 36.84 1.10
Small proteins
Crambin-like from SCOP 5.26 0.87
All alpha
DNA-binding 3-helical bundle from 3Dee 47.37 4.43
Disulphide-bond formation facilitator (DSBA), insertion domain from SCOP 5.26 0.49
Thermolysin-like metalloproteases, C-terminal domain from SCOP 5.26 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1acvb-2 [seq. related domains] All alpha Disulphide-bond formation facilitator (DSBA), insertion domain
1trlb-1 [seq. related domains] All alpha Thermolysin-like metalloproteases, C-terminal domain
2fusb-3 [seq. related domains] undefined undefined
1aum-1 [seq. related domains] undefined undefined
1jud-2 [seq. related domains] undefined undefined
1nkl-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1ab1-1 [seq. related domains] Small proteins Crambin-like
1akha-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
1vnd-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1hcra-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1akha-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2lfb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1pdnc-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
1hdp-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1a5j-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1pdnc-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1wjdb-1 [seq. related domains] undefined undefined
1tc3c-1 [seq. related domains] undefined undefined
2ezi-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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