3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 2.201

Ascend tree (bring in more domains)

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• Classes

• All alpha folds
• Small proteins folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	34.78	1.26
Small proteins
Crambin-like from SCOP	4.35	0.87
All alpha
DNA-binding 3-helical bundle from 3Dee	39.13	4.43
Disulphide-bond formation facilitator (DSBA), insertion domain from SCOP	4.35	0.49
Thermolysin-like metalloproteases, C-terminal domain from SCOP	4.35	0.49
lambda repressor-like DNA-binding domains from SCOP	13.04	1.48

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1ab1-1	[seq. related domains]	Small proteins	Crambin-like
1akha-2	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
1vnd-1	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
1hcra-1	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
1hdp-1	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
1a5j-1	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
1pdnc-1	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
1akha-1	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
2lfb-1	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
1pdnc-2	[seq. related domains]	All alpha	DNA-binding 3-helical bundle
1acvb-2	[seq. related domains]	All alpha	Disulphide-bond formation facilitator (DSBA), insertion domain
1trlb-1	[seq. related domains]	All alpha	Thermolysin-like metalloproteases, C-terminal domain
2fusb-3	[seq. related domains]	undefined	undefined
1aum-1	[seq. related domains]	undefined	undefined
1tc3c-1	[seq. related domains]	undefined	undefined
2ezi-1	[seq. related domains]	undefined	undefined
1nkl-1	[seq. related domains]	undefined	undefined
1wjdb-1	[seq. related domains]	undefined	undefined
1jud-2	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1lbgd-5	[seq. related domains]	All alpha	lambda repressor-like DNA-binding domains
1uxd-1	[seq. related domains]	All alpha	lambda repressor-like DNA-binding domains
2puga-1	[seq. related domains]	All alpha	lambda repressor-like DNA-binding domains
1sly-4	[seq. related domains]	undefined	undefined

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