3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 3.570

Ascend tree (bring in more domains)

Classes% of representative set
undefined 23.08
Small proteins 7.69
All alpha 69.23
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 23.08 0.47
Small proteins
Crambin-like from SCOP 7.69 0.87
All alpha
DNA-binding 3-helical bundle from 3Dee 69.23 4.43

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1ab1-1 [seq. related domains] Small proteins Crambin-like
1hcra-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1a5j-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1pdnc-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1wjdb-1 [seq. related domains] undefined undefined
1tc3c-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1akha-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
1vnd-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2lfb-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1pdnc-2 [seq. related domains] All alpha DNA-binding 3-helical bundle
1hdp-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
1akha-1 [seq. related domains] All alpha DNA-binding 3-helical bundle
2ezi-1 [seq. related domains] undefined undefined

View superpositions of "checked" domains

Enter PDB code - optionally suffixing the code with the chain id.

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