3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.264

Ascend tree (bring in more domains)

Classes% of representative set
undefined 50.00
Membrane and cell surface proteins and peptides 20.00
All alpha 30.00
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 50.00 0.79
Membrane and cell surface proteins and peptides
Variant surface glycoprotein (N-terminal domain) I from 3Dee 10.00 9.09
Variant surface glycoprotein (N-terminal domain) II from 3Dee 10.00 9.09
All alpha
Glycosyltransferases of the superhelical fold Domain I from 3Dee 20.00 0.99
Glycosyltransferases of the superhelical fold Domain II from 3Dee 10.00 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1gai-1 [seq. related domains] All alpha Glycosyltransferases of the superhelical fold Domain I
1vsgb-1 [seq. related domains] Membrane and cell surface proteins and peptides Variant surface glycoprotein (N-terminal domain) I
1vsgb-2 [seq. related domains] Membrane and cell surface proteins and peptides Variant surface glycoprotein (N-terminal domain) II
1dkza-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

3tf4b-2 [seq. related domains] All alpha Glycosyltransferases of the superhelical fold Domain I
1gai-2 [seq. related domains] All alpha Glycosyltransferases of the superhelical fold Domain II
1sqc-1 [seq. related domains] undefined undefined
1sqc-2 [seq. related domains] undefined undefined
1ft1b-1 [seq. related domains] undefined undefined
1cem-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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