3 Dee - Database of Protein Domain Definitions
[
Search
] [
HELP
]
The current cluster is formed at a score of 4.602
Ascend tree (bring in more domains)
Classes
% of representative set
undefined
9.09
Alpha and beta (a/b)
90.91
Breakdown into folds
% of cluster
% of class
undefined
undefined from 3Dee
9.09
0.16
Alpha and beta (a/b)
Flavodoxin-like
from SCOP
45.45
1.82
Periplasmic binding protein-like I Domain II
from 3Dee
45.45
1.82
It is formed by merging the following clusters
Cluster 1
Descend tree into cluster 1
1bap-2
[
seq. related domains
]
Alpha and beta (a/b)
Periplasmic binding protein-like I Domain II
1dbqb-2
[
seq. related domains
]
Alpha and beta (a/b)
Periplasmic binding protein-like I Domain II
1pea-2
[
seq. related domains
]
Alpha and beta (a/b)
Periplasmic binding protein-like I Domain II
1ba2b-2
[
seq. related domains
]
Alpha and beta (a/b)
Periplasmic binding protein-like I Domain II
2liv-2
[
seq. related domains
]
Alpha and beta (a/b)
Periplasmic binding protein-like I Domain II
1lci-2
[
seq. related domains
]
undefined
undefined
Cluster 2
Descend tree into cluster 2
1scud-2
[
seq. related domains
]
Alpha and beta (a/b)
Flavodoxin-like
1reqc-3
[
seq. related domains
]
Alpha and beta (a/b)
Flavodoxin-like
2reqd-3
[
seq. related domains
]
Alpha and beta (a/b)
Flavodoxin-like
1fsp-1
[
seq. related domains
]
Alpha and beta (a/b)
Flavodoxin-like
1scue-3
[
seq. related domains
]
Alpha and beta (a/b)
Flavodoxin-like
View superpositions of "checked" domains
Enter PDB code - optionally suffixing the code with the chain id.
3dee@compbio.dundee.ac.uk