3 Dee - Database of Protein Domain Definitions


[Search] [HELP]

The current cluster is formed at a score of 4.602

Ascend tree (bring in more domains)

Classes% of representative set
undefined 9.09
Alpha and beta (a/b) 90.91
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 9.09 0.16
Alpha and beta (a/b)
Flavodoxin-like from SCOP 45.45 1.82
Periplasmic binding protein-like I Domain II from 3Dee 45.45 1.82

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1bap-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1dbqb-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1pea-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1ba2b-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
2liv-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1lci-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1scud-2 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1reqc-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2reqd-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1fsp-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1scue-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like

View superpositions of "checked" domains


Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk