3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 4.083

Ascend tree (bring in more domains)

Classes% of representative set
undefined 15.38
Alpha and beta (a/b) 84.62
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 15.38 0.31
Alpha and beta (a/b)
Aspartate carbamoyltransferase, Catalytic-chain from 3Dee 7.69 0.36
Flavodoxin-like from SCOP 38.46 1.82
Periplasmic binding protein-like I Domain II from 3Dee 38.46 1.82

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1reqc-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1scud-2 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2reqd-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1fsp-1 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
1scue-3 [seq. related domains] Alpha and beta (a/b) Flavodoxin-like
2liv-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1ba2b-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1bap-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1dbqb-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1pea-2 [seq. related domains] Alpha and beta (a/b) Periplasmic binding protein-like I Domain II
1lci-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1akmc-1 [seq. related domains] Alpha and beta (a/b) Aspartate carbamoyltransferase, Catalytic-chain
1rvvz-1 [seq. related domains] undefined undefined

View superpositions of "checked" domains

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk