3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 3.957

Ascend tree (bring in more domains)

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• Classes

• Alpha and beta (a/b) folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	11.11	0.47
Alpha and beta (a/b)
Aspartate carbamoyltransferase, Catalytic-chain from 3Dee	3.70	0.36
Flavodoxin-like from SCOP	37.04	3.65
Integrin A (or I) domain from SCOP	3.70	0.36
Periplasmic binding protein-like I Domain I from 3Dee	22.22	2.19
Periplasmic binding protein-like I Domain II from 3Dee	18.52	1.82
Phosphofructokinase Domain I from 3Dee	3.70	0.36

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1akmc-1	[seq. related domains]	Alpha and beta (a/b)	Aspartate carbamoyltransferase, Catalytic-chain
1reqc-3	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
1scud-2	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
2reqd-3	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
1fsp-1	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
1scue-3	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
2liv-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain II
1ba2b-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain II
1bap-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain II
1dbqb-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain II
1pea-2	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain II
1rvvz-1	[seq. related domains]	undefined	undefined
1lci-2	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1ag9b-1	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
1oxmb-1	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
1dxy-1	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
2nadb-1	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
1psdb-1	[seq. related domains]	Alpha and beta (a/b)	Flavodoxin-like
1atzb-1	[seq. related domains]	Alpha and beta (a/b)	Integrin A (or I) domain
1dbqb-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain I
1lbgd-6	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain I
1pea-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain I
1ba2b-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain I
2liv-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain I
1bap-1	[seq. related domains]	Alpha and beta (a/b)	Periplasmic binding protein-like I Domain I
2pfkd-1	[seq. related domains]	Alpha and beta (a/b)	Phosphofructokinase Domain I
1fuif-1	[seq. related domains]	undefined	undefined

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