3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.011

Ascend tree (bring in more domains)

Classes% of representative set
undefined 27.27
Multi-domain (alpha and beta) 9.09
Alpha and beta (a/b) 63.64
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 27.27 0.47
Multi-domain (alpha and beta)
p-Hydroxybenzoate hydroxylase as a single domain from 3Dee 9.09 12.50
Alpha and beta (a/b)
FAD (also NAD)-binding motif from 3Dee 54.55 2.19
Trimethylamine dehydrogenase, middle domain from 3Dee 9.09 0.36

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

3cox-1 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1gal-1 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1iux-1 [seq. related domains] Multi-domain (alpha and beta) p-Hydroxybenzoate hydroxylase as a single domain
1gnd-1 [seq. related domains] undefined undefined
1ddoh-1 [seq. related domains] undefined undefined
1fohd-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1joa-1 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
3grt-1 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1vdc-1 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
1fcdb-1 [seq. related domains] Alpha and beta (a/b) FAD (also NAD)-binding motif
2tmdb-2 [seq. related domains] Alpha and beta (a/b) Trimethylamine dehydrogenase, middle domain

Enter PDB code - optionally suffixing the code with the chain id.


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