3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 0.205

Ascend tree (bring in more domains)

Go to (document sections)

• Classes

• All beta folds
• Alpha and beta (a+b) folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	18.75	0.47
Alpha and beta (a+b)
ATP-grasp sub-domain I from 3Dee	25.00	2.07
ATP-grasp sub-domain II from 3Dee	6.25	0.52
D-amino acid aminotransferase Domain I from 3Dee	6.25	0.52
DNA clamp from SCOP	31.25	2.59
Fe,Mn superoxide dismutase (SOD), C-terminal domain from SCOP	6.25	0.52
All beta
OB-fold from SCOP	6.25	0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1axce-2	[seq. related domains]	Alpha and beta (a+b)	DNA clamp
2polb-1	[seq. related domains]	Alpha and beta (a+b)	DNA clamp
2polb-3	[seq. related domains]	Alpha and beta (a+b)	DNA clamp
1axce-1	[seq. related domains]	Alpha and beta (a+b)	DNA clamp
2polb-2	[seq. related domains]	Alpha and beta (a+b)	DNA clamp
1ar5b-2	[seq. related domains]	Alpha and beta (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain
3nuc-1	[seq. related domains]	All beta	OB-fold
1ecra-2	[seq. related domains]	undefined	undefined
1ois-2	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1bncb-2	[seq. related domains]	Alpha and beta (a+b)	ATP-grasp sub-domain I
1gsh-2	[seq. related domains]	Alpha and beta (a+b)	ATP-grasp sub-domain I
1iow-2	[seq. related domains]	Alpha and beta (a+b)	ATP-grasp sub-domain I
1scue-1	[seq. related domains]	Alpha and beta (a+b)	ATP-grasp sub-domain I
1dik-2	[seq. related domains]	Alpha and beta (a+b)	ATP-grasp sub-domain II
1a0gb-1	[seq. related domains]	Alpha and beta (a+b)	D-amino acid aminotransferase Domain I
1auxb-2	[seq. related domains]	undefined	undefined

---

Enter PDB code - optionally suffixing the code with the chain id.

---

3dee@compbio.dundee.ac.uk