3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.120

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Classes% of representative set
undefined 26.32
Alpha and beta (a/b) 5.26
Alpha and beta (a+b) 63.16
All beta 5.26
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 26.32 0.79
Alpha and beta (a/b)
Restriction endonucleases from 3Dee 5.26 0.36
Alpha and beta (a+b)
ATP-grasp sub-domain I from 3Dee 21.05 2.07
ATP-grasp sub-domain II from 3Dee 5.26 0.52
D-amino acid aminotransferase Domain I from 3Dee 5.26 0.52
DNA clamp from SCOP 26.32 2.59
Fe,Mn superoxide dismutase (SOD), C-terminal domain from SCOP 5.26 0.52
All beta
OB-fold from SCOP 5.26 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1bncb-2 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain I
1iow-2 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain I
1gsh-2 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain I
1scue-1 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain I
1dik-2 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1a0gb-1 [seq. related domains] Alpha and beta (a+b) D-amino acid aminotransferase Domain I
2polb-3 [seq. related domains] Alpha and beta (a+b) DNA clamp
1axce-1 [seq. related domains] Alpha and beta (a+b) DNA clamp
1axce-2 [seq. related domains] Alpha and beta (a+b) DNA clamp
2polb-1 [seq. related domains] Alpha and beta (a+b) DNA clamp
2polb-2 [seq. related domains] Alpha and beta (a+b) DNA clamp
1ar5b-2 [seq. related domains] Alpha and beta (a+b) Fe,Mn superoxide dismutase (SOD), C-terminal domain
3nuc-1 [seq. related domains] All beta OB-fold
1auxb-2 [seq. related domains] undefined undefined
1ecra-2 [seq. related domains] undefined undefined
1ois-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1pvib-3 [seq. related domains] Alpha and beta (a/b) Restriction endonucleases
1vjs-2 [seq. related domains] undefined undefined
1fzbd-4 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk