3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 0.741

Ascend tree (bring in more domains)

Classes% of representative set
undefined 55.56
Small proteins 22.22
Peptides 11.11
Alpha and beta (a/b) 11.11
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 55.56 0.79
Small proteins
Acid protease presegment from 3Dee 11.11 0.87
HIV zinc finger-like domains from 3Dee 11.11 0.87
Peptides
Alzheimer's disease amyloid peptides from 3Dee 11.11 2.04
Alpha and beta (a/b)
Insertion in Thioredoxin-like Domain of Glutathione Peroxidase from 3Dee 11.11 0.36

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1aml-1 [seq. related domains] Peptides Alzheimer's disease amyloid peptides
1mfs-1 [seq. related domains] Small proteins HIV zinc finger-like domains
1yuja-1 [seq. related domains] undefined undefined
2glia-3 [seq. related domains] undefined undefined
2ppsk-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1htrp-1 [seq. related domains] Small proteins Acid protease presegment
1gp1b-2 [seq. related domains] Alpha and beta (a/b) Insertion in Thioredoxin-like Domain of Glutathione Peroxidase
1vaob-4 [seq. related domains] undefined undefined
1al0b-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


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