3 Dee - Database of Protein Domain Definitions


[Search] [HELP]

The current cluster is formed at a score of 0.349

Ascend tree (bring in more domains)

Go to (document sections)

Classes% of representative set
undefined 27.40
Small proteins 24.66
Peptides 31.51
Alpha and beta (a/b) 0.68
Alpha and beta (a+b) 1.37
All beta 1.37
All alpha 13.01
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 27.40 6.29
Small proteins
Acid protease presegment from 3Dee 0.68 0.87
Classic zinc finger from 3Dee 15.07 19.13
Endothelin-like from 3Dee 0.68 0.87
HIV zinc finger-like domains from 3Dee 0.68 0.87
Insulin-like from SCOP 2.74 3.48
Metallothionein from SCOP 2.74 3.48
Rubredoxin-like from SCOP 0.68 0.87
Small inhibitors, toxins, lectins from 3Dee 0.68 0.87
mu-Conotoxin GIIIa from 3Dee 0.68 0.87
Peptides
Alzheimer's disease amyloid peptides from 3Dee 1.37 4.08
Antifreeze polypeptide HPLC-6 from 3Dee 4.11 12.24
Atrial natriuretic peptide from 3Dee 0.68 2.04
Coagulation factor IX fragment (residues 1-47) from 3Dee 0.68 2.04
Coagulation factor VIII, membrane-binding peptide from 3Dee 0.68 2.04
Ferredoxin chloroplastic transit peptide from 3Dee 0.68 2.04
Gelsolin fragment (residues 150-169) from 3Dee 0.68 2.04
Glucagon from 3Dee 0.68 2.04
Liposaccharide-binding protein CAP18 (residues 106-137) from 3Dee 0.68 2.04
Mellitin from 3Dee 1.37 4.08
Pancreatic polypeptide from 3Dee 0.68 2.04
Parathyroid hormone fragment (residues 1-37) from 3Dee 0.68 2.04
Phospholamban, cytoplasmic domain residues 1-25 from 3Dee 0.68 2.04
Polymorphic antigen SPAM-H1 (residues 90-127) from 3Dee 0.68 2.04
Protein kinases (PK) Inhibitor from 3Dee 1.37 4.08
RP71935 from 3Dee 0.68 2.04
Simple Helix from 3Dee 0.68 2.04
Simple helix from 3Dee 7.53 22.45
Tertiapin from 3Dee 0.68 2.04
Transmembrane helical fragments from 3Dee 4.11 12.24
Vacuolar targeting peptide from NA-PROPI (residues 29-54) from 3Dee 0.68 2.04
two helices from 3Dee 1.37 4.08
Alpha and beta (a/b)
Insertion in Thioredoxin-like Domain of Glutathione Peroxidase from 3Dee 0.68 0.36
Alpha and beta (a+b)
Anti-LPS factor/recA domain from SCOP 0.68 0.52
S-adenosylmethionine synthetase. MAT inner domain from 3Dee 0.68 0.52
All beta
Viral coat and capsid proteins from SCOP 1.37 0.89
All alpha
4-helical cytokines fragment from 3Dee 0.68 0.49
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I from 3Dee 0.68 0.49
Ectatomin, A & B chains from SCOP 0.68 0.49
Helix-loop-helix DNA-binding domain from SCOP 0.68 0.49
Immunoglobulin-binding protein A, fragment B from 3Dee 0.68 0.49
Long alpha-hairpin from SCOP 0.68 0.49
Oligomers of long helices from 3Dee 6.85 4.93
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain from 3Dee 1.37 0.99
Pheromone proteins from 3Dee 0.68 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1mgx-1 [seq. related domains] Peptides Coagulation factor IX fragment (residues 1-47)
1tmf4-1 [seq. related domains] All beta Viral coat and capsid proteins
2bpa3-1 [seq. related domains] All beta Viral coat and capsid proteins
2ezea-1 [seq. related domains] undefined undefined
1a1rd-1 [seq. related domains] undefined undefined
1avfq-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1htrp-1 [seq. related domains] Small proteins Acid protease presegment
1aml-1 [seq. related domains] Peptides Alzheimer's disease amyloid peptides
1mfs-1 [seq. related domains] Small proteins HIV zinc finger-like domains
1gp1b-2 [seq. related domains] Alpha and beta (a/b) Insertion in Thioredoxin-like Domain of Glutathione Peroxidase
1vaob-4 [seq. related domains] undefined undefined
1al0b-1 [seq. related domains] undefined undefined
1yuja-1 [seq. related domains] undefined undefined
2glia-3 [seq. related domains] undefined undefined
2ppsk-1 [seq. related domains] undefined undefined

Cluster 3

Descend tree into cluster 3

1vlk-2 [seq. related domains] All alpha 4-helical cytokines fragment
1amc-1 [seq. related domains] Peptides Alzheimer's disease amyloid peptides
2recf-2 [seq. related domains] Alpha and beta (a+b) Anti-LPS factor/recA domain
1gln-3 [seq. related domains] All alpha Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I
1wfbb-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1htn-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1coi-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1a2xb-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1toh-2 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1tiic-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1anp-1 [seq. related domains] Peptides Atrial natriuretic peptide
1bbo-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-5 [seq. related domains] Small proteins Classic zinc finger
1znm-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-6 [seq. related domains] Small proteins Classic zinc finger
1znf-1 [seq. related domains] Small proteins Classic zinc finger
1a1ja-3 [seq. related domains] Small proteins Classic zinc finger
1arf-1 [seq. related domains] Small proteins Classic zinc finger
2adr-2 [seq. related domains] Small proteins Classic zinc finger
1tf6d-4 [seq. related domains] Small proteins Classic zinc finger
1a1ja-1 [seq. related domains] Small proteins Classic zinc finger
1sp2-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-4 [seq. related domains] Small proteins Classic zinc finger
7znf-1 [seq. related domains] Small proteins Classic zinc finger
2adr-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-3 [seq. related domains] Small proteins Classic zinc finger
1ubdc-2 [seq. related domains] Small proteins Classic zinc finger
1ubdc-3 [seq. related domains] Small proteins Classic zinc finger
1sp1-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-2 [seq. related domains] Small proteins Classic zinc finger
1fac-1 [seq. related domains] Peptides Coagulation factor VIII, membrane-binding peptide
1ecib-1 [seq. related domains] All alpha Ectatomin, A & B chains
1edn-1 [seq. related domains] Small proteins Endothelin-like
1fct-1 [seq. related domains] Peptides Ferredoxin chloroplastic transit peptide
1sol-1 [seq. related domains] Peptides Gelsolin fragment (residues 150-169)
1gcn-1 [seq. related domains] Peptides Glucagon
1mdyb-1 [seq. related domains] All alpha Helix-loop-helix DNA-binding domain
1zdd-1 [seq. related domains] All alpha Immunoglobulin-binding protein A, fragment B
1bona-1 [seq. related domains] Small proteins Insulin-like
6rlxd-1 [seq. related domains] Small proteins Insulin-like
1bonb-1 [seq. related domains] Small proteins Insulin-like
6rlxc-1 [seq. related domains] Small proteins Insulin-like
1lyp-1 [seq. related domains] Peptides Liposaccharide-binding protein CAP18 (residues 106-137)
1sera-1 [seq. related domains] All alpha Long alpha-hairpin
2mltb-1 [seq. related domains] Peptides Mellitin
1gp2a-1 [seq. related domains] Peptides Mellitin
4mt2-2 [seq. related domains] Small proteins Metallothionein
1dmf-1 [seq. related domains] Small proteins Metallothionein
4mt2-1 [seq. related domains] Small proteins Metallothionein
1dmd-1 [seq. related domains] Small proteins Metallothionein
1fdm-1 [seq. related domains] All alpha Oligomers of long helices
1ltic-1 [seq. related domains] All alpha Oligomers of long helices
1hup-1 [seq. related domains] All alpha Oligomers of long helices
2ifo-1 [seq. related domains] All alpha Oligomers of long helices
1a02f-1 [seq. related domains] All alpha Oligomers of long helices
1gcmc-1 [seq. related domains] All alpha Oligomers of long helices
2dgca-1 [seq. related domains] All alpha Oligomers of long helices
4ifm-1 [seq. related domains] All alpha Oligomers of long helices
1scma-1 [seq. related domains] All alpha Oligomers of long helices
1a02j-1 [seq. related domains] All alpha Oligomers of long helices
1ron-1 [seq. related domains] Peptides Pancreatic polypeptide
1zwg-1 [seq. related domains] Peptides Parathyroid hormone fragment (residues 1-37)
1bbl-1 [seq. related domains] All alpha Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1ebdc-1 [seq. related domains] All alpha Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1erd-1 [seq. related domains] All alpha Pheromone proteins
1plp-1 [seq. related domains] Peptides Phospholamban, cytoplasmic domain residues 1-25
1psm-1 [seq. related domains] Peptides Polymorphic antigen SPAM-H1 (residues 90-127)
1cdkj-1 [seq. related domains] Peptides Protein kinases (PK) Inhibitor
1fmoi-1 [seq. related domains] Peptides Protein kinases (PK) Inhibitor
1rpc-1 [seq. related domains] Peptides RP71935
1med-1 [seq. related domains] Small proteins Rubredoxin-like
1fugb-4 [seq. related domains] Alpha and beta (a+b) S-adenosylmethionine synthetase. MAT inner domain
2dtb-1 [seq. related domains] Peptides Simple Helix
2mag-1 [seq. related domains] Peptides Simple helix
2nr1-1 [seq. related domains] Peptides Simple helix
1odr-1 [seq. related domains] Peptides Simple helix
1cdlg-1 [seq. related domains] Peptides Simple helix
1etgb-1 [seq. related domains] Peptides Simple helix
2bbnb-1 [seq. related domains] Peptides Simple helix
1zec-1 [seq. related domains] Peptides Simple helix
1pei-1 [seq. related domains] Peptides Simple helix
3mra-1 [seq. related domains] Peptides Simple helix
1oeg-1 [seq. related domains] Peptides Simple helix
1a11-1 [seq. related domains] Peptides Simple helix
1kal-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1ter-1 [seq. related domains] Peptides Tertiapin
1btt-1 [seq. related domains] Peptides Transmembrane helical fragments
1bct-1 [seq. related domains] Peptides Transmembrane helical fragments
1aty-1 [seq. related domains] Peptides Transmembrane helical fragments
1peh-1 [seq. related domains] Peptides Transmembrane helical fragments
1btr-1 [seq. related domains] Peptides Transmembrane helical fragments
1spf-1 [seq. related domains] Peptides Transmembrane helical fragments
1vtp-1 [seq. related domains] Peptides Vacuolar targeting peptide from NA-PROPI (residues 29-54)
1tck-1 [seq. related domains] Small proteins mu-Conotoxin GIIIa
1pona-1 [seq. related domains] Peptides two helices
1ponb-1 [seq. related domains] Peptides two helices
1alg-1 [seq. related domains] undefined undefined
1av1d-1 [seq. related domains] undefined undefined
1cuk-3 [seq. related domains] undefined undefined
1hcw-1 [seq. related domains] undefined undefined
1dsk-1 [seq. related domains] undefined undefined
1rmd-2 [seq. related domains] undefined undefined
1ayn4-1 [seq. related domains] undefined undefined
1dsl-1 [seq. related domains] undefined undefined
1fsv-1 [seq. related domains] undefined undefined
1zto-1 [seq. related domains] undefined undefined
3leu-1 [seq. related domains] undefined undefined
1roo-1 [seq. related domains] undefined undefined
1zfo-1 [seq. related domains] undefined undefined
1jswc-3 [seq. related domains] undefined undefined
4hb1-1 [seq. related domains] undefined undefined
1aqt-2 [seq. related domains] undefined undefined
1vpu-1 [seq. related domains] undefined undefined
1loi-1 [seq. related domains] undefined undefined
1atic-1 [seq. related domains] undefined undefined
1fge-1 [seq. related domains] undefined undefined
2erl-1 [seq. related domains] undefined undefined
1prb-1 [seq. related domains] undefined undefined
1ery-1 [seq. related domains] undefined undefined
1abz-1 [seq. related domains] undefined undefined
1novd-1 [seq. related domains] undefined undefined
1aie-1 [seq. related domains] undefined undefined
1vii-1 [seq. related domains] undefined undefined
1bgk-1 [seq. related domains] undefined undefined
1melb-2 [seq. related domains] undefined undefined
1mof-1 [seq. related domains] undefined undefined
1opp-1 [seq. related domains] undefined undefined
1p1p-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk