3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 0.757

Ascend tree (bring in more domains)

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• Classes

• All alpha folds
• Alpha and beta (a+b) folds
• Peptides folds
• Small proteins folds
• undefined folds

• Cluster 1
• Cluster 2
• Cluster 3

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	24.43	5.03
Small proteins
Classic zinc finger from 3Dee	16.79	19.13
Endothelin-like from 3Dee	0.76	0.87
Insulin-like from SCOP	3.05	3.48
Metallothionein from SCOP	3.05	3.48
Rubredoxin-like from SCOP	0.76	0.87
Small inhibitors, toxins, lectins from 3Dee	0.76	0.87
mu-Conotoxin GIIIa from 3Dee	0.76	0.87
Peptides
Alzheimer's disease amyloid peptides from 3Dee	0.76	2.04
Antifreeze polypeptide HPLC-6 from 3Dee	4.58	12.24
Atrial natriuretic peptide from 3Dee	0.76	2.04
Coagulation factor VIII, membrane-binding peptide from 3Dee	0.76	2.04
Ferredoxin chloroplastic transit peptide from 3Dee	0.76	2.04
Gelsolin fragment (residues 150-169) from 3Dee	0.76	2.04
Glucagon from 3Dee	0.76	2.04
Liposaccharide-binding protein CAP18 (residues 106-137) from 3Dee	0.76	2.04
Mellitin from 3Dee	1.53	4.08
Pancreatic polypeptide from 3Dee	0.76	2.04
Parathyroid hormone fragment (residues 1-37) from 3Dee	0.76	2.04
Phospholamban, cytoplasmic domain residues 1-25 from 3Dee	0.76	2.04
Polymorphic antigen SPAM-H1 (residues 90-127) from 3Dee	0.76	2.04
Protein kinases (PK) Inhibitor from 3Dee	1.53	4.08
RP71935 from 3Dee	0.76	2.04
Simple Helix from 3Dee	0.76	2.04
Simple helix from 3Dee	8.40	22.45
Tertiapin from 3Dee	0.76	2.04
Transmembrane helical fragments from 3Dee	4.58	12.24
Vacuolar targeting peptide from NA-PROPI (residues 29-54) from 3Dee	0.76	2.04
two helices from 3Dee	1.53	4.08
Alpha and beta (a+b)
Anti-LPS factor/recA domain from SCOP	0.76	0.52
S-adenosylmethionine synthetase. MAT inner domain from 3Dee	0.76	0.52
All alpha
4-helical cytokines fragment from 3Dee	0.76	0.49
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I from 3Dee	0.76	0.49
Ectatomin, A & B chains from SCOP	0.76	0.49
Helix-loop-helix DNA-binding domain from SCOP	0.76	0.49
Immunoglobulin-binding protein A, fragment B from 3Dee	0.76	0.49
Long alpha-hairpin from SCOP	0.76	0.49
Oligomers of long helices from 3Dee	7.63	4.93
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain from 3Dee	1.53	0.99
Pheromone proteins from 3Dee	0.76	0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vlk-2	[seq. related domains]	All alpha	4-helical cytokines fragment
2recf-2	[seq. related domains]	Alpha and beta (a+b)	Anti-LPS factor/recA domain
1gln-3	[seq. related domains]	All alpha	Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I
1fct-1	[seq. related domains]	Peptides	Ferredoxin chloroplastic transit peptide
1mdyb-1	[seq. related domains]	All alpha	Helix-loop-helix DNA-binding domain
1zdd-1	[seq. related domains]	All alpha	Immunoglobulin-binding protein A, fragment B
1sera-1	[seq. related domains]	All alpha	Long alpha-hairpin
2ifo-1	[seq. related domains]	All alpha	Oligomers of long helices
1a02j-1	[seq. related domains]	All alpha	Oligomers of long helices
1scma-1	[seq. related domains]	All alpha	Oligomers of long helices
2dgca-1	[seq. related domains]	All alpha	Oligomers of long helices
1a02f-1	[seq. related domains]	All alpha	Oligomers of long helices
4ifm-1	[seq. related domains]	All alpha	Oligomers of long helices
1ebdc-1	[seq. related domains]	All alpha	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1bbl-1	[seq. related domains]	All alpha	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1erd-1	[seq. related domains]	All alpha	Pheromone proteins
1fugb-4	[seq. related domains]	Alpha and beta (a+b)	S-adenosylmethionine synthetase. MAT inner domain
1aty-1	[seq. related domains]	Peptides	Transmembrane helical fragments
1bct-1	[seq. related domains]	Peptides	Transmembrane helical fragments
1ponb-1	[seq. related domains]	Peptides	two helices
1pona-1	[seq. related domains]	Peptides	two helices
1ery-1	[seq. related domains]	undefined	undefined
1vii-1	[seq. related domains]	undefined	undefined
1cuk-3	[seq. related domains]	undefined	undefined
1av1d-1	[seq. related domains]	undefined	undefined
4hb1-1	[seq. related domains]	undefined	undefined
1mof-1	[seq. related domains]	undefined	undefined
1atic-1	[seq. related domains]	undefined	undefined
2erl-1	[seq. related domains]	undefined	undefined
1aqt-2	[seq. related domains]	undefined	undefined
1abz-1	[seq. related domains]	undefined	undefined
1vpu-1	[seq. related domains]	undefined	undefined
1prb-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1amc-1	[seq. related domains]	Peptides	Alzheimer's disease amyloid peptides
1wfbb-1	[seq. related domains]	Peptides	Antifreeze polypeptide HPLC-6
1tiic-1	[seq. related domains]	Peptides	Antifreeze polypeptide HPLC-6
1coi-1	[seq. related domains]	Peptides	Antifreeze polypeptide HPLC-6
1a2xb-1	[seq. related domains]	Peptides	Antifreeze polypeptide HPLC-6
1htn-1	[seq. related domains]	Peptides	Antifreeze polypeptide HPLC-6
1toh-2	[seq. related domains]	Peptides	Antifreeze polypeptide HPLC-6
7znf-1	[seq. related domains]	Small proteins	Classic zinc finger
1tf3a-2	[seq. related domains]	Small proteins	Classic zinc finger
1tf3a-1	[seq. related domains]	Small proteins	Classic zinc finger
1znm-1	[seq. related domains]	Small proteins	Classic zinc finger
1znf-1	[seq. related domains]	Small proteins	Classic zinc finger
1a1ja-3	[seq. related domains]	Small proteins	Classic zinc finger
1tf6d-6	[seq. related domains]	Small proteins	Classic zinc finger
1tf6d-5	[seq. related domains]	Small proteins	Classic zinc finger
1bbo-1	[seq. related domains]	Small proteins	Classic zinc finger
1ubdc-1	[seq. related domains]	Small proteins	Classic zinc finger
1a1ja-1	[seq. related domains]	Small proteins	Classic zinc finger
1sp2-1	[seq. related domains]	Small proteins	Classic zinc finger
1tf6d-1	[seq. related domains]	Small proteins	Classic zinc finger
1ubdc-4	[seq. related domains]	Small proteins	Classic zinc finger
1ubdc-3	[seq. related domains]	Small proteins	Classic zinc finger
1sp1-1	[seq. related domains]	Small proteins	Classic zinc finger
2adr-1	[seq. related domains]	Small proteins	Classic zinc finger
1tf3a-3	[seq. related domains]	Small proteins	Classic zinc finger
1ubdc-2	[seq. related domains]	Small proteins	Classic zinc finger
1arf-1	[seq. related domains]	Small proteins	Classic zinc finger
2adr-2	[seq. related domains]	Small proteins	Classic zinc finger
1tf6d-4	[seq. related domains]	Small proteins	Classic zinc finger
1fac-1	[seq. related domains]	Peptides	Coagulation factor VIII, membrane-binding peptide
1ecib-1	[seq. related domains]	All alpha	Ectatomin, A & B chains
1sol-1	[seq. related domains]	Peptides	Gelsolin fragment (residues 150-169)
1gcn-1	[seq. related domains]	Peptides	Glucagon
1bonb-1	[seq. related domains]	Small proteins	Insulin-like
6rlxc-1	[seq. related domains]	Small proteins	Insulin-like
6rlxd-1	[seq. related domains]	Small proteins	Insulin-like
1bona-1	[seq. related domains]	Small proteins	Insulin-like
1lyp-1	[seq. related domains]	Peptides	Liposaccharide-binding protein CAP18 (residues 106-137)
1gp2a-1	[seq. related domains]	Peptides	Mellitin
2mltb-1	[seq. related domains]	Peptides	Mellitin
4mt2-2	[seq. related domains]	Small proteins	Metallothionein
1hup-1	[seq. related domains]	All alpha	Oligomers of long helices
1gcmc-1	[seq. related domains]	All alpha	Oligomers of long helices
1fdm-1	[seq. related domains]	All alpha	Oligomers of long helices
1ltic-1	[seq. related domains]	All alpha	Oligomers of long helices
1ron-1	[seq. related domains]	Peptides	Pancreatic polypeptide
1zwg-1	[seq. related domains]	Peptides	Parathyroid hormone fragment (residues 1-37)
1plp-1	[seq. related domains]	Peptides	Phospholamban, cytoplasmic domain residues 1-25
1psm-1	[seq. related domains]	Peptides	Polymorphic antigen SPAM-H1 (residues 90-127)
1cdkj-1	[seq. related domains]	Peptides	Protein kinases (PK) Inhibitor
1fmoi-1	[seq. related domains]	Peptides	Protein kinases (PK) Inhibitor
1rpc-1	[seq. related domains]	Peptides	RP71935
1med-1	[seq. related domains]	Small proteins	Rubredoxin-like
2dtb-1	[seq. related domains]	Peptides	Simple Helix
1cdlg-1	[seq. related domains]	Peptides	Simple helix
2nr1-1	[seq. related domains]	Peptides	Simple helix
1odr-1	[seq. related domains]	Peptides	Simple helix
1pei-1	[seq. related domains]	Peptides	Simple helix
1zec-1	[seq. related domains]	Peptides	Simple helix
3mra-1	[seq. related domains]	Peptides	Simple helix
1oeg-1	[seq. related domains]	Peptides	Simple helix
1a11-1	[seq. related domains]	Peptides	Simple helix
2bbnb-1	[seq. related domains]	Peptides	Simple helix
2mag-1	[seq. related domains]	Peptides	Simple helix
1etgb-1	[seq. related domains]	Peptides	Simple helix
1kal-1	[seq. related domains]	Small proteins	Small inhibitors, toxins, lectins
1btr-1	[seq. related domains]	Peptides	Transmembrane helical fragments
1spf-1	[seq. related domains]	Peptides	Transmembrane helical fragments
1btt-1	[seq. related domains]	Peptides	Transmembrane helical fragments
1peh-1	[seq. related domains]	Peptides	Transmembrane helical fragments
1vtp-1	[seq. related domains]	Peptides	Vacuolar targeting peptide from NA-PROPI (residues 29-54)
1alg-1	[seq. related domains]	undefined	undefined
1dsk-1	[seq. related domains]	undefined	undefined
1rmd-2	[seq. related domains]	undefined	undefined
1dsl-1	[seq. related domains]	undefined	undefined
1ayn4-1	[seq. related domains]	undefined	undefined
1hcw-1	[seq. related domains]	undefined	undefined
1fsv-1	[seq. related domains]	undefined	undefined
3leu-1	[seq. related domains]	undefined	undefined
1jswc-3	[seq. related domains]	undefined	undefined
1novd-1	[seq. related domains]	undefined	undefined
1zto-1	[seq. related domains]	undefined	undefined
1zfo-1	[seq. related domains]	undefined	undefined
1fge-1	[seq. related domains]	undefined	undefined
1opp-1	[seq. related domains]	undefined	undefined
1aie-1	[seq. related domains]	undefined	undefined
1melb-2	[seq. related domains]	undefined	undefined
1loi-1	[seq. related domains]	undefined	undefined
1p1p-1	[seq. related domains]	undefined	undefined

Cluster 3

Descend tree into cluster 3

1anp-1	[seq. related domains]	Peptides	Atrial natriuretic peptide
1edn-1	[seq. related domains]	Small proteins	Endothelin-like
1dmf-1	[seq. related domains]	Small proteins	Metallothionein
1dmd-1	[seq. related domains]	Small proteins	Metallothionein
4mt2-1	[seq. related domains]	Small proteins	Metallothionein
1ter-1	[seq. related domains]	Peptides	Tertiapin
1tck-1	[seq. related domains]	Small proteins	mu-Conotoxin GIIIa
1bgk-1	[seq. related domains]	undefined	undefined
1roo-1	[seq. related domains]	undefined	undefined

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3dee@compbio.dundee.ac.uk