3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.249

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Classes% of representative set
undefined 20.22
Small proteins 32.58
Peptides 41.57
All alpha 5.62
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 20.22 2.83
Small proteins
Classic zinc finger from 3Dee 24.72 19.13
Insulin-like from SCOP 4.49 3.48
Metallothionein from SCOP 1.12 0.87
Rubredoxin-like from SCOP 1.12 0.87
Small inhibitors, toxins, lectins from 3Dee 1.12 0.87
Peptides
Alzheimer's disease amyloid peptides from 3Dee 1.12 2.04
Antifreeze polypeptide HPLC-6 from 3Dee 6.74 12.24
Coagulation factor VIII, membrane-binding peptide from 3Dee 1.12 2.04
Gelsolin fragment (residues 150-169) from 3Dee 1.12 2.04
Glucagon from 3Dee 1.12 2.04
Liposaccharide-binding protein CAP18 (residues 106-137) from 3Dee 1.12 2.04
Mellitin from 3Dee 2.25 4.08
Pancreatic polypeptide from 3Dee 1.12 2.04
Parathyroid hormone fragment (residues 1-37) from 3Dee 1.12 2.04
Phospholamban, cytoplasmic domain residues 1-25 from 3Dee 1.12 2.04
Polymorphic antigen SPAM-H1 (residues 90-127) from 3Dee 1.12 2.04
Protein kinases (PK) Inhibitor from 3Dee 2.25 4.08
RP71935 from 3Dee 1.12 2.04
Simple Helix from 3Dee 1.12 2.04
Simple helix from 3Dee 12.36 22.45
Transmembrane helical fragments from 3Dee 4.49 8.16
Vacuolar targeting peptide from NA-PROPI (residues 29-54) from 3Dee 1.12 2.04
All alpha
Ectatomin, A & B chains from SCOP 1.12 0.49
Oligomers of long helices from 3Dee 4.49 1.97

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

7znf-1 [seq. related domains] Small proteins Classic zinc finger
1znf-1 [seq. related domains] Small proteins Classic zinc finger
1a1ja-3 [seq. related domains] Small proteins Classic zinc finger
1tf3a-3 [seq. related domains] Small proteins Classic zinc finger
1tf3a-1 [seq. related domains] Small proteins Classic zinc finger
1znm-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-3 [seq. related domains] Small proteins Classic zinc finger
1sp1-1 [seq. related domains] Small proteins Classic zinc finger
2adr-1 [seq. related domains] Small proteins Classic zinc finger
1ubdc-4 [seq. related domains] Small proteins Classic zinc finger
1sp2-1 [seq. related domains] Small proteins Classic zinc finger
1a1ja-1 [seq. related domains] Small proteins Classic zinc finger
2adr-2 [seq. related domains] Small proteins Classic zinc finger
1arf-1 [seq. related domains] Small proteins Classic zinc finger
1tf6d-4 [seq. related domains] Small proteins Classic zinc finger
1tf6d-6 [seq. related domains] Small proteins Classic zinc finger
1tf6d-5 [seq. related domains] Small proteins Classic zinc finger
1bbo-1 [seq. related domains] Small proteins Classic zinc finger
1tf3a-2 [seq. related domains] Small proteins Classic zinc finger
1ubdc-2 [seq. related domains] Small proteins Classic zinc finger
1fac-1 [seq. related domains] Peptides Coagulation factor VIII, membrane-binding peptide
1sol-1 [seq. related domains] Peptides Gelsolin fragment (residues 150-169)
6rlxc-1 [seq. related domains] Small proteins Insulin-like
1bona-1 [seq. related domains] Small proteins Insulin-like
1bonb-1 [seq. related domains] Small proteins Insulin-like
6rlxd-1 [seq. related domains] Small proteins Insulin-like
4mt2-2 [seq. related domains] Small proteins Metallothionein
1zwg-1 [seq. related domains] Peptides Parathyroid hormone fragment (residues 1-37)
1cdkj-1 [seq. related domains] Peptides Protein kinases (PK) Inhibitor
1fmoi-1 [seq. related domains] Peptides Protein kinases (PK) Inhibitor
1rpc-1 [seq. related domains] Peptides RP71935
1med-1 [seq. related domains] Small proteins Rubredoxin-like
1kal-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1alg-1 [seq. related domains] undefined undefined
1rmd-2 [seq. related domains] undefined undefined
3leu-1 [seq. related domains] undefined undefined
1ayn4-1 [seq. related domains] undefined undefined
1dsl-1 [seq. related domains] undefined undefined
1fsv-1 [seq. related domains] undefined undefined
1hcw-1 [seq. related domains] undefined undefined
1fge-1 [seq. related domains] undefined undefined
1zfo-1 [seq. related domains] undefined undefined
1aie-1 [seq. related domains] undefined undefined
1melb-2 [seq. related domains] undefined undefined
1p1p-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1amc-1 [seq. related domains] Peptides Alzheimer's disease amyloid peptides
1toh-2 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1a2xb-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1tiic-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1coi-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1htn-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1wfbb-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1ecib-1 [seq. related domains] All alpha Ectatomin, A & B chains
1gcn-1 [seq. related domains] Peptides Glucagon
1lyp-1 [seq. related domains] Peptides Liposaccharide-binding protein CAP18 (residues 106-137)
1gp2a-1 [seq. related domains] Peptides Mellitin
2mltb-1 [seq. related domains] Peptides Mellitin
1hup-1 [seq. related domains] All alpha Oligomers of long helices
1gcmc-1 [seq. related domains] All alpha Oligomers of long helices
1fdm-1 [seq. related domains] All alpha Oligomers of long helices
1ltic-1 [seq. related domains] All alpha Oligomers of long helices
1ron-1 [seq. related domains] Peptides Pancreatic polypeptide
1plp-1 [seq. related domains] Peptides Phospholamban, cytoplasmic domain residues 1-25
1psm-1 [seq. related domains] Peptides Polymorphic antigen SPAM-H1 (residues 90-127)
2dtb-1 [seq. related domains] Peptides Simple Helix
1odr-1 [seq. related domains] Peptides Simple helix
1pei-1 [seq. related domains] Peptides Simple helix
2mag-1 [seq. related domains] Peptides Simple helix
1oeg-1 [seq. related domains] Peptides Simple helix
1cdlg-1 [seq. related domains] Peptides Simple helix
2bbnb-1 [seq. related domains] Peptides Simple helix
1a11-1 [seq. related domains] Peptides Simple helix
2nr1-1 [seq. related domains] Peptides Simple helix
1etgb-1 [seq. related domains] Peptides Simple helix
3mra-1 [seq. related domains] Peptides Simple helix
1zec-1 [seq. related domains] Peptides Simple helix
1peh-1 [seq. related domains] Peptides Transmembrane helical fragments
1spf-1 [seq. related domains] Peptides Transmembrane helical fragments
1btt-1 [seq. related domains] Peptides Transmembrane helical fragments
1btr-1 [seq. related domains] Peptides Transmembrane helical fragments
1vtp-1 [seq. related domains] Peptides Vacuolar targeting peptide from NA-PROPI (residues 29-54)
1jswc-3 [seq. related domains] undefined undefined
1zto-1 [seq. related domains] undefined undefined
1novd-1 [seq. related domains] undefined undefined
1opp-1 [seq. related domains] undefined undefined
1dsk-1 [seq. related domains] undefined undefined
1loi-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk