3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.893

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Classes% of representative set
undefined 14.29
Peptides 73.81
All alpha 11.90
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 14.29 0.94
Peptides
Alzheimer's disease amyloid peptides from 3Dee 2.38 2.04
Antifreeze polypeptide HPLC-6 from 3Dee 14.29 12.24
Glucagon from 3Dee 2.38 2.04
Liposaccharide-binding protein CAP18 (residues 106-137) from 3Dee 2.38 2.04
Mellitin from 3Dee 4.76 4.08
Pancreatic polypeptide from 3Dee 2.38 2.04
Phospholamban, cytoplasmic domain residues 1-25 from 3Dee 2.38 2.04
Polymorphic antigen SPAM-H1 (residues 90-127) from 3Dee 2.38 2.04
Simple Helix from 3Dee 2.38 2.04
Simple helix from 3Dee 26.19 22.45
Transmembrane helical fragments from 3Dee 9.52 8.16
Vacuolar targeting peptide from NA-PROPI (residues 29-54) from 3Dee 2.38 2.04
All alpha
Ectatomin, A & B chains from SCOP 2.38 0.49
Oligomers of long helices from 3Dee 9.52 1.97

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1amc-1 [seq. related domains] Peptides Alzheimer's disease amyloid peptides
1a2xb-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1wfbb-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1toh-2 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1tiic-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1htn-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1coi-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1ecib-1 [seq. related domains] All alpha Ectatomin, A & B chains
1gcn-1 [seq. related domains] Peptides Glucagon
1lyp-1 [seq. related domains] Peptides Liposaccharide-binding protein CAP18 (residues 106-137)
1gp2a-1 [seq. related domains] Peptides Mellitin
2mltb-1 [seq. related domains] Peptides Mellitin
1hup-1 [seq. related domains] All alpha Oligomers of long helices
1gcmc-1 [seq. related domains] All alpha Oligomers of long helices
1ltic-1 [seq. related domains] All alpha Oligomers of long helices
1plp-1 [seq. related domains] Peptides Phospholamban, cytoplasmic domain residues 1-25
2dtb-1 [seq. related domains] Peptides Simple Helix
1cdlg-1 [seq. related domains] Peptides Simple helix
2bbnb-1 [seq. related domains] Peptides Simple helix
1oeg-1 [seq. related domains] Peptides Simple helix
3mra-1 [seq. related domains] Peptides Simple helix
1a11-1 [seq. related domains] Peptides Simple helix
2mag-1 [seq. related domains] Peptides Simple helix
2nr1-1 [seq. related domains] Peptides Simple helix
1odr-1 [seq. related domains] Peptides Simple helix
1etgb-1 [seq. related domains] Peptides Simple helix
1pei-1 [seq. related domains] Peptides Simple helix
1zec-1 [seq. related domains] Peptides Simple helix
1btr-1 [seq. related domains] Peptides Transmembrane helical fragments
1btt-1 [seq. related domains] Peptides Transmembrane helical fragments
1vtp-1 [seq. related domains] Peptides Vacuolar targeting peptide from NA-PROPI (residues 29-54)
1dsk-1 [seq. related domains] undefined undefined
1novd-1 [seq. related domains] undefined undefined
1loi-1 [seq. related domains] undefined undefined
1jswc-3 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1fdm-1 [seq. related domains] All alpha Oligomers of long helices
1ron-1 [seq. related domains] Peptides Pancreatic polypeptide
1psm-1 [seq. related domains] Peptides Polymorphic antigen SPAM-H1 (residues 90-127)
1spf-1 [seq. related domains] Peptides Transmembrane helical fragments
1peh-1 [seq. related domains] Peptides Transmembrane helical fragments
1zto-1 [seq. related domains] undefined undefined
1opp-1 [seq. related domains] undefined undefined

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