3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.110

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Classes% of representative set
undefined 36.36
Peptides 15.15
Alpha and beta (a+b) 6.06
All alpha 42.42
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 36.36 1.89
Peptides
Ferredoxin chloroplastic transit peptide from 3Dee 3.03 2.04
Transmembrane helical fragments from 3Dee 6.06 4.08
two helices from 3Dee 6.06 4.08
Alpha and beta (a+b)
Anti-LPS factor/recA domain from SCOP 3.03 0.52
S-adenosylmethionine synthetase. MAT inner domain from 3Dee 3.03 0.52
All alpha
4-helical cytokines fragment from 3Dee 3.03 0.49
Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I from 3Dee 3.03 0.49
Helix-loop-helix DNA-binding domain from SCOP 3.03 0.49
Immunoglobulin-binding protein A, fragment B from 3Dee 3.03 0.49
Long alpha-hairpin from SCOP 3.03 0.49
Oligomers of long helices from 3Dee 18.18 2.96
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain from 3Dee 6.06 0.99
Pheromone proteins from 3Dee 3.03 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1vlk-2 [seq. related domains] All alpha 4-helical cytokines fragment
2recf-2 [seq. related domains] Alpha and beta (a+b) Anti-LPS factor/recA domain
1gln-3 [seq. related domains] All alpha Anticodon-binding (C-terminal) domain of glutamyl-tRNA Domain I
1fct-1 [seq. related domains] Peptides Ferredoxin chloroplastic transit peptide
1zdd-1 [seq. related domains] All alpha Immunoglobulin-binding protein A, fragment B
1sera-1 [seq. related domains] All alpha Long alpha-hairpin
1ebdc-1 [seq. related domains] All alpha Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1bbl-1 [seq. related domains] All alpha Peripheral subunit-binding domain of 2-oxo acid dehydrogenase domain
1erd-1 [seq. related domains] All alpha Pheromone proteins
1fugb-4 [seq. related domains] Alpha and beta (a+b) S-adenosylmethionine synthetase. MAT inner domain
1aty-1 [seq. related domains] Peptides Transmembrane helical fragments
1pona-1 [seq. related domains] Peptides two helices
1ponb-1 [seq. related domains] Peptides two helices
1ery-1 [seq. related domains] undefined undefined
1vii-1 [seq. related domains] undefined undefined
1aqt-2 [seq. related domains] undefined undefined
4hb1-1 [seq. related domains] undefined undefined
1atic-1 [seq. related domains] undefined undefined
2erl-1 [seq. related domains] undefined undefined
1vpu-1 [seq. related domains] undefined undefined
1abz-1 [seq. related domains] undefined undefined
1prb-1 [seq. related domains] undefined undefined
1cuk-3 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1mdyb-1 [seq. related domains] All alpha Helix-loop-helix DNA-binding domain
1a02f-1 [seq. related domains] All alpha Oligomers of long helices
4ifm-1 [seq. related domains] All alpha Oligomers of long helices
2ifo-1 [seq. related domains] All alpha Oligomers of long helices
2dgca-1 [seq. related domains] All alpha Oligomers of long helices
1scma-1 [seq. related domains] All alpha Oligomers of long helices
1a02j-1 [seq. related domains] All alpha Oligomers of long helices
1bct-1 [seq. related domains] Peptides Transmembrane helical fragments
1av1d-1 [seq. related domains] undefined undefined
1mof-1 [seq. related domains] undefined undefined

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3dee@compbio.dundee.ac.uk