3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 3.273

Ascend tree (bring in more domains)

Classes% of representative set
undefined 16.67
Peptides 66.67
All alpha 16.67
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 16.67 0.16
Peptides
Pancreatic polypeptide from 3Dee 16.67 2.04
Polymorphic antigen SPAM-H1 (residues 90-127) from 3Dee 16.67 2.04
Transmembrane helical fragments from 3Dee 33.33 4.08
All alpha
Oligomers of long helices from 3Dee 16.67 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1psm-1 [seq. related domains] Peptides Polymorphic antigen SPAM-H1 (residues 90-127)
1spf-1 [seq. related domains] Peptides Transmembrane helical fragments
1peh-1 [seq. related domains] Peptides Transmembrane helical fragments
1opp-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1fdm-1 [seq. related domains] All alpha Oligomers of long helices
1ron-1 [seq. related domains] Peptides Pancreatic polypeptide

View superpositions of "checked" domains

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk