3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.633

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Classes% of representative set
undefined 6.25
Alpha and beta (a+b) 81.25
All beta 6.25
All alpha 6.25
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 6.25 0.16
Alpha and beta (a+b)
A DNA topoisomerase I domain from 3Dee 12.50 1.04
Cystatin-like from SCOP 56.25 4.66
RNA bacteriophage capsid protein from SCOP 12.50 1.04
All beta
Streptavidin-like from SCOP 6.25 0.45
All alpha
Lipoxigenase-1, A DNA topoisomerase I domain from 3Dee 6.25 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1spub-2 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1askb-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1a90-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1udii-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1dvd-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1ksib-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1iskb-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1spub-3 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1std-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1qbec-1 [seq. related domains] Alpha and beta (a+b) RNA bacteriophage capsid protein
1mvbc-1 [seq. related domains] Alpha and beta (a+b) RNA bacteriophage capsid protein
1swgd-1 [seq. related domains] All beta Streptavidin-like
1ospo-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1yua-2 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
1vcc-1 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
1yge-3 [seq. related domains] All alpha Lipoxigenase-1, A DNA topoisomerase I domain

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