3 Dee - Database of Protein Domain Definitions


[Search] [HELP]

The current cluster is formed at a score of 0.850

Ascend tree (bring in more domains)

Go to (document sections)

Classes% of representative set
undefined 41.18
Small proteins 5.88
Alpha and beta (a+b) 23.53
All beta 29.41
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 41.18 1.10
Small proteins
Rubredoxin-like from SCOP 5.88 0.87
Alpha and beta (a+b)
"histone-like" proteins from arhaea from 3Dee 5.88 0.52
Cysteine proteinases Domain I from 3Dee 5.88 0.52
Interleukin 8-like chemokines from 3Dee 11.76 1.04
All beta
SH3-like barrel from SCOP 23.53 1.79
Viral coat and capsid proteins from SCOP 5.88 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1sso-1 [seq. related domains] Alpha and beta (a+b) "histone-like" proteins from arhaea
1sdf-1 [seq. related domains] Alpha and beta (a+b) Interleukin 8-like chemokines
1mi2b-1 [seq. related domains] Alpha and beta (a+b) Interleukin 8-like chemokines
1acmd-2 [seq. related domains] Small proteins Rubredoxin-like
1pht-1 [seq. related domains] All beta SH3-like barrel
1bib-3 [seq. related domains] All beta SH3-like barrel
1nlpc-1 [seq. related domains] All beta SH3-like barrel
1psf-1 [seq. related domains] All beta SH3-like barrel
1po22-2 [seq. related domains] All beta Viral coat and capsid proteins
2rel-1 [seq. related domains] undefined undefined
1vif-1 [seq. related domains] undefined undefined
1ihwb-1 [seq. related domains] undefined undefined
1bb9-1 [seq. related domains] undefined undefined
1rvf2-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1csbe-1 [seq. related domains] Alpha and beta (a+b) Cysteine proteinases Domain I
1ahjh-3 [seq. related domains] undefined undefined
3vub-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk