3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.677

Ascend tree (bring in more domains)

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Classes% of representative set
undefined 45.83
Small proteins 4.17
Alpha and beta (a+b) 8.33
All beta 41.67
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 45.83 3.46
Small proteins
Antifungal protein (AGAFP) from SCOP 2.08 0.87
Rubredoxin-like from SCOP 2.08 0.87
Alpha and beta (a+b)
"histone-like" proteins from arhaea from 3Dee 2.08 0.52
Cysteine proteinases Domain I from 3Dee 2.08 0.52
Interleukin 8-like chemokines from 3Dee 4.17 1.04
All beta
Barrel-sandwich hybrid from SCOP 8.33 1.79
Mu transposase, C-terminal domain from 3Dee 2.08 0.45
OB-fold from SCOP 18.75 4.02
SH3-like barrel from SCOP 8.33 1.79
Viral coat and capsid proteins from SCOP 2.08 0.45
beta-Clip from 3Dee 2.08 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1sso-1 [seq. related domains] Alpha and beta (a+b) "histone-like" proteins from arhaea
1csbe-1 [seq. related domains] Alpha and beta (a+b) Cysteine proteinases Domain I
1sdf-1 [seq. related domains] Alpha and beta (a+b) Interleukin 8-like chemokines
1mi2b-1 [seq. related domains] Alpha and beta (a+b) Interleukin 8-like chemokines
1acmd-2 [seq. related domains] Small proteins Rubredoxin-like
1bib-3 [seq. related domains] All beta SH3-like barrel
1psf-1 [seq. related domains] All beta SH3-like barrel
1pht-1 [seq. related domains] All beta SH3-like barrel
1nlpc-1 [seq. related domains] All beta SH3-like barrel
1po22-2 [seq. related domains] All beta Viral coat and capsid proteins
2rel-1 [seq. related domains] undefined undefined
1ihwb-1 [seq. related domains] undefined undefined
1vif-1 [seq. related domains] undefined undefined
3vub-1 [seq. related domains] undefined undefined
1ahjh-3 [seq. related domains] undefined undefined
1bb9-1 [seq. related domains] undefined undefined
1rvf2-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1afp-1 [seq. related domains] Small proteins Antifungal protein (AGAFP)
1iyv-1 [seq. related domains] All beta Barrel-sandwich hybrid
2pcfb-2 [seq. related domains] All beta Barrel-sandwich hybrid
1fyc-1 [seq. related domains] All beta Barrel-sandwich hybrid
1bdo-1 [seq. related domains] All beta Barrel-sandwich hybrid
1bcmb-2 [seq. related domains] All beta Mu transposase, C-terminal domain
1bcpk-1 [seq. related domains] All beta OB-fold
1bcpl-1 [seq. related domains] All beta OB-fold
1bcpi-2 [seq. related domains] All beta OB-fold
1ae3-1 [seq. related domains] All beta OB-fold
1mef-1 [seq. related domains] All beta OB-fold
1se4-2 [seq. related domains] All beta OB-fold
1aszb-1 [seq. related domains] All beta OB-fold
4ull-1 [seq. related domains] All beta OB-fold
1krt-1 [seq. related domains] All beta OB-fold
1a5ob-1 [seq. related domains] All beta beta-Clip
1sro-1 [seq. related domains] undefined undefined
1lt6p-1 [seq. related domains] undefined undefined
1pfsb-1 [seq. related domains] undefined undefined
1jmca-2 [seq. related domains] undefined undefined
1a63-1 [seq. related domains] undefined undefined
1kwab-1 [seq. related domains] undefined undefined
1cuk-1 [seq. related domains] undefined undefined
1pdr-1 [seq. related domains] undefined undefined
1msi-1 [seq. related domains] undefined undefined
1auub-1 [seq. related domains] undefined undefined
1a0i-2 [seq. related domains] undefined undefined
1cko-2 [seq. related domains] undefined undefined
2tssc-2 [seq. related domains] undefined undefined
1jmca-1 [seq. related domains] undefined undefined
1ah9-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk