3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 2.183

Ascend tree (bring in more domains)

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• Classes

• All beta folds
• Small proteins folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	52.00	2.04
Small proteins
Antifungal protein (AGAFP) from SCOP	4.00	0.87
All beta
Mu transposase, C-terminal domain from 3Dee	4.00	0.45
OB-fold from SCOP	36.00	4.02
beta-Clip from 3Dee	4.00	0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1bcpl-1	[seq. related domains]	All beta	OB-fold
1aszb-1	[seq. related domains]	All beta	OB-fold
1bcpk-1	[seq. related domains]	All beta	OB-fold
1bcpi-2	[seq. related domains]	All beta	OB-fold
1krt-1	[seq. related domains]	All beta	OB-fold
1a5ob-1	[seq. related domains]	All beta	beta-Clip
1pdr-1	[seq. related domains]	undefined	undefined
1jmca-1	[seq. related domains]	undefined	undefined
1lt6p-1	[seq. related domains]	undefined	undefined
1jmca-2	[seq. related domains]	undefined	undefined
1a63-1	[seq. related domains]	undefined	undefined
1kwab-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1afp-1	[seq. related domains]	Small proteins	Antifungal protein (AGAFP)
1bcmb-2	[seq. related domains]	All beta	Mu transposase, C-terminal domain
4ull-1	[seq. related domains]	All beta	OB-fold
1ae3-1	[seq. related domains]	All beta	OB-fold
1se4-2	[seq. related domains]	All beta	OB-fold
1mef-1	[seq. related domains]	All beta	OB-fold
1sro-1	[seq. related domains]	undefined	undefined
1pfsb-1	[seq. related domains]	undefined	undefined
1cuk-1	[seq. related domains]	undefined	undefined
1a0i-2	[seq. related domains]	undefined	undefined
1cko-2	[seq. related domains]	undefined	undefined
2tssc-2	[seq. related domains]	undefined	undefined
1ah9-1	[seq. related domains]	undefined	undefined

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