3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.678

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Classes% of representative set
undefined 46.67
Small proteins 3.33
All beta 50.00
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 46.67 2.20
Small proteins
Antifungal protein (AGAFP) from SCOP 3.33 0.87
All beta
Barrel-sandwich hybrid from SCOP 13.33 1.79
Mu transposase, C-terminal domain from 3Dee 3.33 0.45
OB-fold from SCOP 30.00 4.02
beta-Clip from 3Dee 3.33 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1afp-1 [seq. related domains] Small proteins Antifungal protein (AGAFP)
1bcmb-2 [seq. related domains] All beta Mu transposase, C-terminal domain
1bcpl-1 [seq. related domains] All beta OB-fold
1aszb-1 [seq. related domains] All beta OB-fold
4ull-1 [seq. related domains] All beta OB-fold
1bcpk-1 [seq. related domains] All beta OB-fold
1se4-2 [seq. related domains] All beta OB-fold
1bcpi-2 [seq. related domains] All beta OB-fold
1ae3-1 [seq. related domains] All beta OB-fold
1mef-1 [seq. related domains] All beta OB-fold
1krt-1 [seq. related domains] All beta OB-fold
1a5ob-1 [seq. related domains] All beta beta-Clip
1sro-1 [seq. related domains] undefined undefined
1jmca-1 [seq. related domains] undefined undefined
1lt6p-1 [seq. related domains] undefined undefined
1kwab-1 [seq. related domains] undefined undefined
1pfsb-1 [seq. related domains] undefined undefined
1jmca-2 [seq. related domains] undefined undefined
1a63-1 [seq. related domains] undefined undefined
1cuk-1 [seq. related domains] undefined undefined
1pdr-1 [seq. related domains] undefined undefined
1cko-2 [seq. related domains] undefined undefined
2tssc-2 [seq. related domains] undefined undefined
1a0i-2 [seq. related domains] undefined undefined
1ah9-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1iyv-1 [seq. related domains] All beta Barrel-sandwich hybrid
2pcfb-2 [seq. related domains] All beta Barrel-sandwich hybrid
1fyc-1 [seq. related domains] All beta Barrel-sandwich hybrid
1bdo-1 [seq. related domains] All beta Barrel-sandwich hybrid
1msi-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk