3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 1.149

Ascend tree (bring in more domains)

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• Classes

• Alpha and beta (a+b) folds
• Alpha and beta (a/b) folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	43.75	1.10
Alpha and beta (a/b)
Nucleotidyltransferases Domain I from 3Dee	12.50	0.73
Alpha and beta (a+b)
Ferredoxin-like from SCOP	6.25	0.52
Hedgehog/DD-peptidase from SCOP	6.25	0.52
S-adenosylmethionine synthetase. MAT outer domain from 3Dee	18.75	1.55
Tautomerase/MIF from SCOP	12.50	1.04

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1kdnc-1	[seq. related domains]	Alpha and beta (a+b)	Ferredoxin-like
1vhh-1	[seq. related domains]	Alpha and beta (a+b)	Hedgehog/DD-peptidase
1cumb-1	[seq. related domains]	undefined	undefined
2tbd-1	[seq. related domains]	undefined	undefined
1vaob-1	[seq. related domains]	undefined	undefined
1lbu-2	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1knyb-1	[seq. related domains]	Alpha and beta (a/b)	Nucleotidyltransferases Domain I
2bpgb-2	[seq. related domains]	Alpha and beta (a/b)	Nucleotidyltransferases Domain I
1fugb-3	[seq. related domains]	Alpha and beta (a+b)	S-adenosylmethionine synthetase. MAT outer domain
1fugb-2	[seq. related domains]	Alpha and beta (a+b)	S-adenosylmethionine synthetase. MAT outer domain
1fugb-1	[seq. related domains]	Alpha and beta (a+b)	S-adenosylmethionine synthetase. MAT outer domain
1otgc-1	[seq. related domains]	Alpha and beta (a+b)	Tautomerase/MIF
1otff-3	[seq. related domains]	Alpha and beta (a+b)	Tautomerase/MIF
1lci-4	[seq. related domains]	undefined	undefined
1mifc-2	[seq. related domains]	undefined	undefined
1dapb-2	[seq. related domains]	undefined	undefined

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Enter PDB code - optionally suffixing the code with the chain id.

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