3 Dee - Database of Protein Domain Definitions

[Search] [HELP]

The current cluster is formed at a score of 1.619

Ascend tree (bring in more domains)

Go to (document sections)

Classes% of representative set
undefined 39.39
All beta 60.61
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 39.39 2.04
All beta
Acid proteases Domain I from 3Dee 9.09 1.34
Barwin-like endoglucanases from 3Dee 3.03 0.45
Elongation factor Tu (EF-Tu), the C-terminal domain from 3Dee 3.03 0.45
Pyruvate kinase beta-barrel domain from SCOP 6.06 0.89
Reductase/elongation factor common domain from 3Dee 18.18 2.68
Trypsin-like serine proteases Domain I from 3Dee 12.12 1.79
Trypsin-like serine proteases Domain II from 3Dee 9.09 1.34

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1hvc-2 [seq. related domains] All beta Acid proteases Domain I
3fivb-1 [seq. related domains] All beta Acid proteases Domain I
1mvpb-1 [seq. related domains] All beta Acid proteases Domain I
1arc-2 [seq. related domains] All beta Trypsin-like serine proteases Domain I
1tal-1 [seq. related domains] All beta Trypsin-like serine proteases Domain I
1aksa-2 [seq. related domains] All beta Trypsin-like serine proteases Domain I
2sga-1 [seq. related domains] All beta Trypsin-like serine proteases Domain I
2sga-2 [seq. related domains] All beta Trypsin-like serine proteases Domain II
1sgfa-2 [seq. related domains] All beta Trypsin-like serine proteases Domain II
1arc-1 [seq. related domains] All beta Trypsin-like serine proteases Domain II
1exfa-2 [seq. related domains] undefined undefined
1exfa-1 [seq. related domains] undefined undefined
2snwb-2 [seq. related domains] undefined undefined
1axj-1 [seq. related domains] undefined undefined
1havb-1 [seq. related domains] undefined undefined
1havb-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1bw4-1 [seq. related domains] All beta Barwin-like endoglucanases
1aipf-3 [seq. related domains] All beta Elongation factor Tu (EF-Tu), the C-terminal domain
1a3wb-3 [seq. related domains] All beta Pyruvate kinase beta-barrel domain
1pyk-2 [seq. related domains] All beta Pyruvate kinase beta-barrel domain
1aipf-1 [seq. related domains] All beta Reductase/elongation factor common domain
1ndh-1 [seq. related domains] All beta Reductase/elongation factor common domain
2pia-1 [seq. related domains] All beta Reductase/elongation factor common domain
1efga-2 [seq. related domains] All beta Reductase/elongation factor common domain
1quf-1 [seq. related domains] All beta Reductase/elongation factor common domain
1fdr-1 [seq. related domains] All beta Reductase/elongation factor common domain
1skyb-1 [seq. related domains] undefined undefined
1fdo-4 [seq. related domains] undefined undefined
1sftb-1 [seq. related domains] undefined undefined
1aw8e-1 [seq. related domains] undefined undefined
4eng-1 [seq. related domains] undefined undefined
1skye-1 [seq. related domains] undefined undefined
4dmr-4 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk