3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 0.563

Ascend tree (bring in more domains)

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• Classes

• All beta folds
• Alpha and beta (a+b) folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	41.67	2.36
Alpha and beta (a+b)
FKBP-like from SCOP	2.78	0.52
All beta
Acid proteases Domain I from 3Dee	8.33	1.34
Barwin-like endoglucanases from 3Dee	2.78	0.45
Elongation factor Tu (EF-Tu), the C-terminal domain from 3Dee	2.78	0.45
Pyruvate kinase beta-barrel domain from SCOP	5.56	0.89
Reductase/elongation factor common domain from 3Dee	16.67	2.68
Trypsin-like serine proteases Domain I from 3Dee	11.11	1.79
Trypsin-like serine proteases Domain II from 3Dee	8.33	1.34

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1grj-2	[seq. related domains]	Alpha and beta (a+b)	FKBP-like
1jsg-1	[seq. related domains]	undefined	undefined
1ay9b-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1hvc-2	[seq. related domains]	All beta	Acid proteases Domain I
3fivb-1	[seq. related domains]	All beta	Acid proteases Domain I
1mvpb-1	[seq. related domains]	All beta	Acid proteases Domain I
1bw4-1	[seq. related domains]	All beta	Barwin-like endoglucanases
1aipf-3	[seq. related domains]	All beta	Elongation factor Tu (EF-Tu), the C-terminal domain
1a3wb-3	[seq. related domains]	All beta	Pyruvate kinase beta-barrel domain
1pyk-2	[seq. related domains]	All beta	Pyruvate kinase beta-barrel domain
2pia-1	[seq. related domains]	All beta	Reductase/elongation factor common domain
1aipf-1	[seq. related domains]	All beta	Reductase/elongation factor common domain
1quf-1	[seq. related domains]	All beta	Reductase/elongation factor common domain
1fdr-1	[seq. related domains]	All beta	Reductase/elongation factor common domain
1efga-2	[seq. related domains]	All beta	Reductase/elongation factor common domain
1ndh-1	[seq. related domains]	All beta	Reductase/elongation factor common domain
1arc-2	[seq. related domains]	All beta	Trypsin-like serine proteases Domain I
1aksa-2	[seq. related domains]	All beta	Trypsin-like serine proteases Domain I
2sga-1	[seq. related domains]	All beta	Trypsin-like serine proteases Domain I
1tal-1	[seq. related domains]	All beta	Trypsin-like serine proteases Domain I
1arc-1	[seq. related domains]	All beta	Trypsin-like serine proteases Domain II
1sgfa-2	[seq. related domains]	All beta	Trypsin-like serine proteases Domain II
2sga-2	[seq. related domains]	All beta	Trypsin-like serine proteases Domain II
1skyb-1	[seq. related domains]	undefined	undefined
1havb-1	[seq. related domains]	undefined	undefined
1exfa-1	[seq. related domains]	undefined	undefined
1aw8e-1	[seq. related domains]	undefined	undefined
1axj-1	[seq. related domains]	undefined	undefined
2snwb-2	[seq. related domains]	undefined	undefined
1sftb-1	[seq. related domains]	undefined	undefined
1havb-2	[seq. related domains]	undefined	undefined
1skye-1	[seq. related domains]	undefined	undefined
4eng-1	[seq. related domains]	undefined	undefined
1fdo-4	[seq. related domains]	undefined	undefined
1exfa-2	[seq. related domains]	undefined	undefined
4dmr-4	[seq. related domains]	undefined	undefined

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Enter PDB code - optionally suffixing the code with the chain id.

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