|
|
3 Dee - Database of Protein Domain Definitions |
| Classes | % of representative set |
|---|---|
| undefined | 28.00 |
| Small proteins | 2.50 |
| Alpha and beta (a+b) | 9.50 |
| All beta | 59.50 |
| All alpha | 0.50 |
| Breakdown into folds | % of cluster | % of class |
|---|---|---|
| undefined | ||
| undefined from 3Dee | 28.00 | 8.81 |
| Small proteins | ||
Ada DNA repair protein, N-terminal domain (N-Ada 10) | 0.50 | 0.87 |
| Small inhibitors, toxins, lectins from 3Dee | 0.50 | 0.87 |
| Snake toxin-like | 1.50 | 2.61 |
| Alpha and beta (a+b) | ||
| ATP-grasp sub-domain II | 2.00 | 2.07 |
| CI-2 family of serine protease inhibitors | 0.50 | 0.52 |
| Cell cycle regulatory proteins | 0.50 | 0.52 |
| FKBP-like | 0.50 | 0.52 |
| Glutamine synthetase smaller domain from 3Dee | 0.50 | 0.52 |
| Nucleoside triphosphate pyrophosphorylase (MutT) | 0.50 | 0.52 |
| RuBisCO, small subunit | 0.50 | 0.52 |
| Subtilisin inhibitor | 0.50 | 0.52 |
| beta-Grasp from 3Dee | 4.00 | 4.15 |
| All beta | ||
| Acid proteases Domain I | 1.50 | 1.34 |
| Barwin-like endoglucanases from 3Dee | 0.50 | 0.45 |
| Colipase binding domain-like from 3Dee | 1.00 | 0.89 |
| Common fold of diphtheria toxin/transcription factors/cytochrome f | 2.00 | 1.79 |
| Crystallins/protein S from 3Dee | 1.00 | 0.89 |
| Cupredoxins | 4.50 | 4.02 |
| Double-stranded beta-helix, jelly-roll domain | 1.50 | 1.34 |
| Elongation factor Tu (EF-Tu), the C-terminal domain from 3Dee | 0.50 | 0.45 |
| Galactose-binding domain-like | 2.00 | 1.79 |
| Immunoglobulin-like beta-sandwich | 22.00 | 19.64 |
| Prealbumin-like | 1.00 | 0.89 |
| Pyruvate kinase beta-barrel domain | 1.00 | 0.89 |
| Reductase/elongation factor common domain from 3Dee | 3.00 | 2.68 |
| Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain | 0.50 | 0.45 |
| Trypsin-like serine proteases Domain I | 2.00 | 1.79 |
| Trypsin-like serine proteases Domain II | 1.50 | 1.34 |
| Tumor necrosis factor from 3Dee | 1.00 | 0.89 |
| Viral coat and capsid proteins | 10.00 | 8.93 |
| alpha-Amylase inhibitor from 3Dee | 0.50 | 0.45 |
| alpha-Amylases, beta-sheet domain from 3Dee | 2.00 | 1.79 |
| beta-Clip from 3Dee | 0.50 | 0.45 |
| All alpha | ||
| Glycosyltransferases of the superhelical fold Domain II from 3Dee | 0.50 | 0.49 |
| 1hvc-2 | [seq. related domains] | All beta |
Acid proteases Domain I |
| 3fivb-1 | [seq. related domains] | All beta |
Acid proteases Domain I |
| 1mvpb-1 | [seq. related domains] | All beta |
Acid proteases Domain I |
| 1bw4-1 | [seq. related domains] | All beta |
Barwin-like endoglucanases |
| 1aipf-3 | [seq. related domains] | All beta |
Elongation factor Tu (EF-Tu), the C-terminal domain |
| 1grj-2 | [seq. related domains] | Alpha and beta (a+b) |
FKBP-like |
| 1a3wb-3 | [seq. related domains] | All beta |
Pyruvate kinase beta-barrel domain |
| 1pyk-2 | [seq. related domains] | All beta |
Pyruvate kinase beta-barrel domain |
| 2pia-1 | [seq. related domains] | All beta |
Reductase/elongation factor common domain |
| 1aipf-1 | [seq. related domains] | All beta |
Reductase/elongation factor common domain |
| 1efga-2 | [seq. related domains] | All beta |
Reductase/elongation factor common domain |
| 1quf-1 | [seq. related domains] | All beta |
Reductase/elongation factor common domain |
| 1fdr-1 | [seq. related domains] | All beta |
Reductase/elongation factor common domain |
| 1ndh-1 | [seq. related domains] | All beta |
Reductase/elongation factor common domain |
| 1arc-2 | [seq. related domains] | All beta |
Trypsin-like serine proteases Domain I |
| 2sga-1 | [seq. related domains] | All beta |
Trypsin-like serine proteases Domain I |
| 1aksa-2 | [seq. related domains] | All beta |
Trypsin-like serine proteases Domain I |
| 1tal-1 | [seq. related domains] | All beta |
Trypsin-like serine proteases Domain I |
| 1sgfa-2 | [seq. related domains] | All beta |
Trypsin-like serine proteases Domain II |
| 1arc-1 | [seq. related domains] | All beta |
Trypsin-like serine proteases Domain II |
| 2sga-2 | [seq. related domains] | All beta |
Trypsin-like serine proteases Domain II |
| 1skye-1 | [seq. related domains] | undefined |
undefined |
| 1ay9b-1 | [seq. related domains] | undefined |
undefined |
| 1exfa-1 | [seq. related domains] | undefined |
undefined |
| 1skyb-1 | [seq. related domains] | undefined |
undefined |
| 1exfa-2 | [seq. related domains] | undefined |
undefined |
| 2snwb-2 | [seq. related domains] | undefined |
undefined |
| 1axj-1 | [seq. related domains] | undefined |
undefined |
| 1fdo-4 | [seq. related domains] | undefined |
undefined |
| 1sftb-1 | [seq. related domains] | undefined |
undefined |
| 1havb-1 | [seq. related domains] | undefined |
undefined |
| 1aw8e-1 | [seq. related domains] | undefined |
undefined |
| 4eng-1 | [seq. related domains] | undefined |
undefined |
| 1jsg-1 | [seq. related domains] | undefined |
undefined |
| 1havb-2 | [seq. related domains] | undefined |
undefined |
| 4dmr-4 | [seq. related domains] | undefined |
undefined |
| 1gsh-3 | [seq. related domains] | Alpha and beta (a+b) |
ATP-grasp sub-domain II |
| 1bncb-3 | [seq. related domains] | Alpha and beta (a+b) |
ATP-grasp sub-domain II |
| 1iow-3 | [seq. related domains] | Alpha and beta (a+b) |
ATP-grasp sub-domain II |
| 1scue-2 | [seq. related domains] | Alpha and beta (a+b) |
ATP-grasp sub-domain II |
| 1adn-1 | [seq. related domains] | Small proteins |
Ada DNA repair protein, N-terminal domain (N-Ada 10) |
| 1cirb-1 | [seq. related domains] | Alpha and beta (a+b) |
CI-2 family of serine protease inhibitors |
| 1lgr-1 | [seq. related domains] | Alpha and beta (a+b) |
Glutamine synthetase smaller domain |
| 1tum-1 | [seq. related domains] | Alpha and beta (a+b) |
Nucleoside triphosphate pyrophosphorylase (MutT) |
| 1ethd-1 | [seq. related domains] | Small proteins |
Small inhibitors, toxins, lectins |
| 1cdr-1 | [seq. related domains] | Small proteins |
Snake toxin-like |
| 1txb-1 | [seq. related domains] | Small proteins |
Snake toxin-like |
| 1mahf-1 | [seq. related domains] | Small proteins |
Snake toxin-like |
| 2ptl-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Grasp |
| 1se4-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Grasp |
| 2cjo-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Grasp |
| 1put-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Grasp |
| 2tssc-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Grasp |
| 1igca-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Grasp |
| 1aarb-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Grasp |
| 1tif-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Grasp |
| 2glia-1 | [seq. related domains] | undefined |
undefined |
| 1an7b-2 | [seq. related domains] | undefined |
undefined |
| 2sak-1 | [seq. related domains] | undefined |
undefined |
| 1rfa-1 | [seq. related domains] | undefined |
undefined |
| 2rgf-1 | [seq. related domains] | undefined |
undefined |
| 1acc-3 | [seq. related domains] | undefined |
undefined |
| 2hgf-1 | [seq. related domains] | undefined |
undefined |
| 1dktb-1 | [seq. related domains] | Alpha and beta (a+b) |
Cell cycle regulatory proteins |
| 1rp1-2 | [seq. related domains] | All beta |
Colipase binding domain-like |
| 1yge-1 | [seq. related domains] | All beta |
Colipase binding domain-like |
| 1ycsa-1 | [seq. related domains] | All beta |
Common fold of diphtheria toxin/transcription factors/cytochrome f |
| 1sgk-3 | [seq. related domains] | All beta |
Common fold of diphtheria toxin/transcription factors/cytochrome f |
| 1exh-1 | [seq. related domains] | All beta |
Common fold of diphtheria toxin/transcription factors/cytochrome f |
| 2pcfb-1 | [seq. related domains] | All beta |
Common fold of diphtheria toxin/transcription factors/cytochrome f |
| 1a5db-2 | [seq. related domains] | All beta |
Crystallins/protein S |
| 1prs-2 | [seq. related domains] | All beta |
Crystallins/protein S |
| 1ar1b-2 | [seq. related domains] | All beta |
Cupredoxins |
| 1adwb-1 | [seq. related domains] | All beta |
Cupredoxins |
| 2cbp-1 | [seq. related domains] | All beta |
Cupredoxins |
| 1aozb-3 | [seq. related domains] | All beta |
Cupredoxins |
| 1ndsc-1 | [seq. related domains] | All beta |
Cupredoxins |
| 1ag0b-1 | [seq. related domains] | All beta |
Cupredoxins |
| 1aozb-1 | [seq. related domains] | All beta |
Cupredoxins |
| 1iuz-1 | [seq. related domains] | All beta |
Cupredoxins |
| 1aozb-2 | [seq. related domains] | All beta |
Cupredoxins |
| 2phlb-5 | [seq. related domains] | All beta |
Double-stranded beta-helix, jelly-roll domain |
| 1caxe-5 | [seq. related domains] | All beta |
Double-stranded beta-helix, jelly-roll domain |
| 1wapv-1 | [seq. related domains] | All beta |
Double-stranded beta-helix, jelly-roll domain |
| 1ciy-3 | [seq. related domains] | All beta |
Galactose-binding domain-like |
| 1gog-1 | [seq. related domains] | All beta |
Galactose-binding domain-like |
| 1bgmp-2 | [seq. related domains] | All beta |
Galactose-binding domain-like |
| 1bhgb-1 | [seq. related domains] | All beta |
Galactose-binding domain-like |
| 3tf4b-3 | [seq. related domains] | All alpha |
Glycosyltransferases of the superhelical fold Domain II |
| 1gog-3 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1azvb-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1cid-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1jrhl-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1cfb-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1dant-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1itbb-3 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1hwgc-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1fnf-3 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1wiqb-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1zxq-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 2ncm-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1ctn-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1dant-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 2msph-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1ramb-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1tiu-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1fieb-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1wiu-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1hnf-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1bgmp-3 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1suh-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1bhgb-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1fieb-4 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1euu-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1ncob-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1ten-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1hwgc-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1jrhi-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1ebpb-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1eso-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 3dpa-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1bgmp-5 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1a25b-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1cid-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1ll1-4 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 3dpa-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1fieb-5 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1a8jl-2 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1pamb-3 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1neu-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1wiqb-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1zxq-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 1cfb-1 | [seq. related domains] | All beta |
Immunoglobulin-like beta-sandwich |
| 2tryb-1 | [seq. related domains] | All beta |
Prealbumin-like |
| 1pamb-4 | [seq. related domains] | All beta |
Prealbumin-like |
| 1rcxw-1 | [seq. related domains] | Alpha and beta (a+b) |
RuBisCO, small subunit |
| 1bvp6-2 | [seq. related domains] | All beta |
Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain |
| 3ssi-1 | [seq. related domains] | Alpha and beta (a+b) |
Subtilisin inhibitor |
| 1aly-1 | [seq. related domains] | All beta |
Tumor necrosis factor |
| 1a8mc-1 | [seq. related domains] | All beta |
Tumor necrosis factor |
| 2tbvc-2 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1smvc-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1tnvc-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1bmv1-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1po23-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1tmf1-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1tnva-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1a6ca-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 2bbvb-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1bmv2-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1cwpc-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1rvf2-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 2stv-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1a6ca-2 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1a6ca-3 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1al0g-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1fod1-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1tnvb-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1po21-1 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1bmv2-2 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 2ait-1 | [seq. related domains] | All beta |
alpha-Amylase inhibitor |
| 1vjs-3 | [seq. related domains] | All beta |
alpha-Amylases, beta-sheet domain |
| 1dhka-2 | [seq. related domains] | All beta |
alpha-Amylases, beta-sheet domain |
| 1pamb-2 | [seq. related domains] | All beta |
alpha-Amylases, beta-sheet domain |
| 6taa-2 | [seq. related domains] | All beta |
alpha-Amylases, beta-sheet domain |
| 1dun-1 | [seq. related domains] | All beta |
beta-Clip |
| 1wkt-1 | [seq. related domains] | undefined |
undefined |
| 1rcy-1 | [seq. related domains] | undefined |
undefined |
| 2amg-2 | [seq. related domains] | undefined |
undefined |
| 1ksr-1 | [seq. related domains] | undefined |
undefined |
| 1sfp-1 | [seq. related domains] | undefined |
undefined |
| 1whp-1 | [seq. related domains] | undefined |
undefined |
| 1auyc-1 | [seq. related domains] | undefined |
undefined |
| 1ndsc-2 | [seq. related domains] | undefined |
undefined |
| 1xbrb-1 | [seq. related domains] | undefined |
undefined |
| 1ebpb-1 | [seq. related domains] | undefined |
undefined |
| 1ramb-1 | [seq. related domains] | undefined |
undefined |
| 1qbb-1 | [seq. related domains] | undefined |
undefined |
| 1ag4-1 | [seq. related domains] | undefined |
undefined |
| 1nbcb-1 | [seq. related domains] | undefined |
undefined |
| 1itbb-1 | [seq. related domains] | undefined |
undefined |
| 4kbpd-1 | [seq. related domains] | undefined |
undefined |
| 1ulp-1 | [seq. related domains] | undefined |
undefined |
| 1stme-1 | [seq. related domains] | undefined |
undefined |
| 1lktf-3 | [seq. related domains] | undefined |
undefined |
| 1ahm-1 | [seq. related domains] | undefined |
undefined |
| 1anu-1 | [seq. related domains] | undefined |
undefined |
| 1tul-1 | [seq. related domains] | undefined |
undefined |
| 1svb-2 | [seq. related domains] | undefined |
undefined |
| 1ad2-1 | [seq. related domains] | undefined |
undefined |
| 1rhoc-1 | [seq. related domains] | undefined |
undefined |
| 1acc-4 | [seq. related domains] | undefined |
undefined |
| 2snwb-1 | [seq. related domains] | undefined |
undefined |
| 1ah1-1 | [seq. related domains] | undefined |
undefined |
| 1amx-1 | [seq. related domains] | undefined |
undefined |
| 1a02n-1 | [seq. related domains] | undefined |
undefined |
| 1a34a-1 | [seq. related domains] | undefined |
undefined |
| 1qbb-4 | [seq. related domains] | undefined |
undefined |
| 1cto-1 | [seq. related domains] | undefined |
undefined |
| 1itbb-2 | [seq. related domains] | undefined |
undefined |