3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 0.603

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Classes% of representative set
undefined 25.93
Small proteins 18.52
Alpha and beta (a+b) 55.56
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 25.93 1.10
Small proteins
Ada DNA repair protein, N-terminal domain (N-Ada 10) from SCOP 3.70 0.87
Small inhibitors, toxins, lectins from 3Dee 3.70 0.87
Snake toxin-like from SCOP 11.11 2.61
Alpha and beta (a+b)
ATP-grasp sub-domain II from 3Dee 14.81 2.07
CI-2 family of serine protease inhibitors from SCOP 3.70 0.52
Glutamine synthetase smaller domain from 3Dee 3.70 0.52
Nucleoside triphosphate pyrophosphorylase (MutT) from SCOP 3.70 0.52
beta-Grasp from 3Dee 29.63 4.15

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1gsh-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1iow-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1bncb-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1scue-2 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1adn-1 [seq. related domains] Small proteins Ada DNA repair protein, N-terminal domain (N-Ada 10)
1cirb-1 [seq. related domains] Alpha and beta (a+b) CI-2 family of serine protease inhibitors
1lgr-1 [seq. related domains] Alpha and beta (a+b) Glutamine synthetase smaller domain
1tum-1 [seq. related domains] Alpha and beta (a+b) Nucleoside triphosphate pyrophosphorylase (MutT)
1igca-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1aarb-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2ptl-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1se4-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2cjo-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1put-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2tssc-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1tif-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2glia-1 [seq. related domains] undefined undefined
1rfa-1 [seq. related domains] undefined undefined
2rgf-1 [seq. related domains] undefined undefined
2sak-1 [seq. related domains] undefined undefined
1an7b-2 [seq. related domains] undefined undefined
1acc-3 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1ethd-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1cdr-1 [seq. related domains] Small proteins Snake toxin-like
1txb-1 [seq. related domains] Small proteins Snake toxin-like
1mahf-1 [seq. related domains] Small proteins Snake toxin-like
2hgf-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


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