3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 0.929

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Classes% of representative set
undefined 27.27
Small proteins 4.55
Alpha and beta (a+b) 68.18
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 27.27 0.94
Small proteins
Ada DNA repair protein, N-terminal domain (N-Ada 10) from SCOP 4.55 0.87
Alpha and beta (a+b)
ATP-grasp sub-domain II from 3Dee 18.18 2.07
CI-2 family of serine protease inhibitors from SCOP 4.55 0.52
Glutamine synthetase smaller domain from 3Dee 4.55 0.52
Nucleoside triphosphate pyrophosphorylase (MutT) from SCOP 4.55 0.52
beta-Grasp from 3Dee 36.36 4.15

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1lgr-1 [seq. related domains] Alpha and beta (a+b) Glutamine synthetase smaller domain
1tum-1 [seq. related domains] Alpha and beta (a+b) Nucleoside triphosphate pyrophosphorylase (MutT)
1aarb-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2tssc-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2cjo-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1put-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1se4-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1acc-3 [seq. related domains] undefined undefined
2rgf-1 [seq. related domains] undefined undefined
2sak-1 [seq. related domains] undefined undefined
1rfa-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1bncb-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1scue-2 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1iow-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1gsh-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1adn-1 [seq. related domains] Small proteins Ada DNA repair protein, N-terminal domain (N-Ada 10)
1cirb-1 [seq. related domains] Alpha and beta (a+b) CI-2 family of serine protease inhibitors
1igca-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2ptl-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1tif-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1an7b-2 [seq. related domains] undefined undefined
2glia-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk