Uses of Class
compbio.data.sequence.Alignment

Packages that use Alignment

Package	Description
compbio.data.sequence	A data model for multiple sequence alignment web services and utility methods that work on the objects of this model.

Uses of Alignment in compbio.data.sequence

Methods in compbio.data.sequence that return Alignment

Modifier and Type	Method and Description
static Alignment	ClustalAlignmentUtil.readClustalFile(java.io.File file)
static Alignment	ClustalAlignmentUtil.readClustalFile(java.io.InputStream instream) Read Clustal formatted alignment.

Methods in compbio.data.sequence with parameters of type Alignment

Modifier and Type	Method and Description
static void	ClustalAlignmentUtil.writeClustalAlignment(java.io.Writer out, Alignment alignment) Write Clustal formatted alignment Limitations: does not record the consensus.