See: Description
Class | Description |
---|---|
Alignment |
Multiple sequence alignment.
|
AlignmentMetadata |
Alignment metadata e.g.
|
ClustalAlignmentUtil |
Tools to read and write clustal formated files
|
FastaReader |
Reads files with FASTA formatted sequences.
|
FastaSequence |
A FASTA formatted sequence.
|
Range | |
RNAStructReader | |
RNAStructScoreManager | |
Score |
A value class for AACon annotation results storage.
|
ScoreManager | |
ScoreManager.ScoreHolder | |
SequenceUtil |
Utility class for operations on sequences
|
Enum | Description |
---|---|
ConservationMethod |
Enumeration listing of all the supported methods.
|
DisemblResult | |
DisorderMethod | |
GlobProtResult | |
IUPredResult | |
Program |
The list of programmes that can produce alignments
|
RNAStructReader.AlifoldLine | |
RNAStructReader.AlifoldResult | |
RNAStructReader.RNAOut | |
SMERFSConstraints |
Enumeration defining two constraints for SMERFS columns score calculation.
|
Exception | Description |
---|---|
UnknownFileFormatException |