Uses of Package
compbio.data.sequence

Packages that use compbio.data.sequence

Package	Description
compbio.data.sequence	A data model for multiple sequence alignment web services and utility methods that work on the objects of this model.
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.

Classes in compbio.data.sequence used by compbio.data.sequence

Class and Description
Alignment Multiple sequence alignment.
AlignmentMetadata Alignment metadata e.g.
ConservationMethod Enumeration listing of all the supported methods.
DisemblResult
DisorderMethod
FastaSequence A FASTA formatted sequence.
GlobProtResult
IUPredResult
Program The list of programmes that can produce alignments
Range
RNAStructReader.AlifoldLine
RNAStructReader.AlifoldResult
RNAStructReader.RNAOut
RNAStructScoreManager
Score A value class for AACon annotation results storage.
ScoreManager
ScoreManager.ScoreHolder
SMERFSConstraints Enumeration defining two constraints for SMERFS columns score calculation.
UnknownFileFormatException

Classes in compbio.data.sequence used by compbio.metadata

Class and Description
FastaSequence A FASTA formatted sequence.