See: Description
| Interface | Description |
|---|---|
| Argument<T> |
An unmodifiable view for the options and parameters, with one exception - it
allows to set a value
|
| Class | Description |
|---|---|
| ChunkHolder |
Represents a chunk of a string data together with the position in a file for
the next read operation.
|
| Limit<T> |
A value object containing a maximum number of sequences and a maximum average
sequence length for a preset.
|
| LimitsManager<T> |
A collection of Limits
|
| Option<T> |
Command line option/flag or multiple exclusive options with no value.
|
| Parameter<T> |
A single value containing an option supported by the web service e.g.
|
| Preset<T> |
Collection of Options and Parameters with their values
|
| PresetManager<T> |
Collection of presets and methods to manipulate them @see
Preset |
| RunnerConfig<T> | |
| ValueConstrain |
The type and the lower and upper boundaries for numerical value.
|
| Enum | Description |
|---|---|
| JobStatus |
The status of the job.
|
| ValueConstrain.Type |
| Exception | Description |
|---|---|
| JobExecutionException |
JobExecutionException is thrown wherever the results of the calculation
cannot be obtained.
|
| JobSubmissionException |
Exception for generic problems with JobSubmission it is often thrown as a
wrapper for the lower level exceptions like IOException or DrmaaException.
|
| LimitExceededException |
This exception is thrown if the task larger in size that the limit that
applies to the calculation.
|
| ResultNotAvailableException |
ResultNotAvailableException is thrown wherever the results of the calculation
cannot be obtained.
|
| UnsupportedRuntimeException |
Indicates that the server could not execute native executables.
|
| WrongParameterException |
WrongParameterException is thrown wherever the
RunnerConfig object
does not match the actual runnable or then attempting to set the value of
Argument to invalid value. |