Uses of Class
compbio.metadata.Option

Packages that use Option

Package	Description
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.

Uses of Option in compbio.metadata

Subclasses of Option in compbio.metadata

Modifier and Type	Class and Description
class	Parameter<T> A single value containing an option supported by the web service e.g.

Fields in compbio.metadata with type parameters of type Option

Modifier and Type	Field and Description
(package private) java.util.List<Option<T>>	RunnerConfig.arguments
(package private) java.util.List<Option<T>>	RunnerConfig.options

Methods in compbio.metadata that return Option

Modifier and Type	Method and Description
Option<T>	RunnerConfig.getArgument(java.lang.String name) Returns the argument by its name if found, NULL otherwise.
Option<T>	RunnerConfig.getArgumentByOptionName(java.lang.String optionName) Returns the argument by option name, NULL if the argument is not found

Methods in compbio.metadata that return types with arguments of type Option

Modifier and Type	Method and Description
java.util.List<Option<T>>	RunnerConfig.getArguments() Returns list of Parameter and Option supported by current runner
java.util.List<Option<T>>	Preset.getArguments(RunnerConfig<T> rconfig) Converts list of options as String to type Option
java.util.List<Option<T>>	RunnerConfig.getOptions() Returns the list of the Options supported by the executable of type T

Methods in compbio.metadata with parameters of type Option

Modifier and Type	Method and Description
void	RunnerConfig.addOption(Option<T> option) Adds Option to the internal list of options

Method parameters in compbio.metadata with type arguments of type Option

Modifier and Type	Method and Description
void	RunnerConfig.setOptions(java.util.List<Option<T>> parameters) Adds the list of options or parameters to the internal list of options

Constructors in compbio.metadata with parameters of type Option

Constructor and Description
WrongParameterException(Option<?> option)