Constant Field Values

compbio.data.*

compbio.data.sequence.ClustalAlignmentUtil
Modifier and Type	Constant Field	Value
`public static final char`	`gapchar`	`45`
`private static final int`	`maxNameLength`	`30`
`private static final int`	`minNameHolderLength`	`10`
`private static final int`	`oneLineAlignmentLength`	`60`
`private static final java.lang.String`	`spacer`	`" "`

compbio.data.sequence.FastaReader
Modifier and Type Constant Field Value

private final java.lang.String DELIM ">"
compbio.data.sequence.ScoreManager
Modifier and Type Constant Field Value

public static final java.lang.String SINGLE_ENTRY_KEY "Alignment"

compbio.data.sequence.FastaReader
Modifier and Type	Constant Field	Value
`private final java.lang.String`	`DELIM`	`">"`

compbio.data.sequence.ScoreManager
Modifier and Type	Constant Field	Value
`public static final java.lang.String`	`SINGLE_ENTRY_KEY`	`"Alignment"`

compbio.data.sequence.SequenceUtil
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`JRONN_WRONG_FORMAT_MESSAGE`	`"Jronn file must be in the following format:\n>sequence_name\n M\tV\tS\n0.43\t0.22\t0.65\nWhere first line is the sequence name,\nsecond line is the tab delimited sequence,\nthird line contains tab delimited disorder prediction values.\nNo lines are allowed between these three. Additionally, the number of sequence residues must be equal to the number of the disorder values."`

compbio.data.sequence.SMERFSConstraints
Modifier and Type Constant Field Value

public static final double DEFAULT_GAP_THRESHOLD 0.1

public static final int DEFAULT_WINDOW_SIZE 7
compbio.data.sequence.UnknownFileFormatException
Modifier and Type Constant Field Value

private static final long serialVersionUID 196629543695636854L

compbio.data.sequence.SMERFSConstraints
Modifier and Type	Constant Field	Value
`public static final double`	`DEFAULT_GAP_THRESHOLD`	`0.1`
`public static final int`	`DEFAULT_WINDOW_SIZE`	`7`

compbio.data.sequence.UnknownFileFormatException
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`196629543695636854L`

compbio.metadata.JobExecutionException
Modifier and Type Constant Field Value

private static final long serialVersionUID -5477751361755778769L
compbio.metadata.JobSubmissionException
Modifier and Type Constant Field Value

private static final long serialVersionUID 607986894357895572L
compbio.metadata.LimitExceededException
Modifier and Type Constant Field Value

private static final long serialVersionUID 15066952180013505L
compbio.metadata.Preset<T>
Modifier and Type Constant Field Value

private static final java.lang.String SPACE " "
compbio.metadata.PresetManager<T>
Modifier and Type Constant Field Value

public static final java.lang.String LOCAL_ENGINE_LIMIT_PRESET "# LocalEngineExecutionLimit #"
compbio.metadata.ResultNotAvailableException
Modifier and Type Constant Field Value

private static final long serialVersionUID -5475613614578761L
compbio.metadata.UnsupportedRuntimeException
Modifier and Type Constant Field Value

private static final long serialVersionUID -86624836785110293L
compbio.metadata.WrongParameterException
Modifier and Type Constant Field Value

private static final long serialVersionUID -547775417557345769L