Uses of Class
compbio.metadata.LimitExceededException

Packages that use LimitExceededException

Package	Description
compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.ws.server

Uses of LimitExceededException in compbio.data.msa

Methods in compbio.data.msa that throw LimitExceededException

Modifier and Type	Method and Description
java.lang.String	MsaWS.align(java.util.List<FastaSequence> sequences) Align a list of sequences with default settings.
java.lang.String	SequenceAnnotation.analize(java.util.List<FastaSequence> sequences) Analyse the sequences.
java.lang.String	MsaWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options) Align a list of sequences with options.
java.lang.String	SequenceAnnotation.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options) Analyse the sequences according to custom settings defined in options list.
java.lang.String	MsaWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<T> preset) Align a list of sequences with preset.
java.lang.String	SequenceAnnotation.presetAnalize(java.util.List<FastaSequence> sequences, Preset<T> preset) Analyse the sequences according to the preset settings.

Uses of LimitExceededException in compbio.metadata

Methods in compbio.metadata that return LimitExceededException

Modifier and Type	Method and Description
static LimitExceededException	LimitExceededException.newLimitExceeded(Limit<?> limit, java.util.List<FastaSequence> seqs)

Uses of LimitExceededException in compbio.ws.server

Methods in compbio.ws.server that throw LimitExceededException

Modifier and Type	Method and Description
static <T> java.lang.String	WSUtil.align(java.util.List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger logger, java.lang.String callingMethod, Limit<T> limit)
java.lang.String	SequenceAnnotationService.analize(java.util.List<FastaSequence> sequences)
java.lang.String	AAConWS.analize(java.util.List<FastaSequence> sequences)
java.lang.String	RNAalifoldWS.analize(java.util.List<FastaSequence> sequences)
java.lang.String	AAConWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<AACon>> options)
java.lang.String	DisemblWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<Disembl>> options)
java.lang.String	GlobPlotWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<GlobPlot>> options)
java.lang.String	RNAalifoldWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<RNAalifold>> options)
java.lang.String	SequenceAnnotationService.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options)
java.lang.String	AAConWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<AACon> preset)
java.lang.String	DisemblWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<Disembl> preset)
java.lang.String	GlobPlotWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<GlobPlot> preset)
java.lang.String	IUPredWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<IUPred> preset)
java.lang.String	RNAalifoldWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<RNAalifold> preset)
java.lang.String	SequenceAnnotationService.presetAnalize(java.util.List<FastaSequence> sequences, Preset<T> preset)