Uses of Class
compbio.metadata.PresetManager

Packages that use PresetManager

Package	Description
compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.engine.client
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.runner	Utilities commonly used by all runners.
compbio.ws.client	A command line client and web services testing client for JAva Bioinformatics Analysis Web Services.
compbio.ws.server

Uses of PresetManager in compbio.data.msa

Methods in compbio.data.msa that return PresetManager

Modifier and Type	Method and Description
PresetManager<T>	Metadata.getPresets() Get presets supported by a web service

Uses of PresetManager in compbio.data.msa.jaxws

Fields in compbio.data.msa.jaxws declared as PresetManager

Modifier and Type	Field and Description
private PresetManager	GetPresetsResponse._return

Methods in compbio.data.msa.jaxws that return PresetManager

Modifier and Type	Method and Description
PresetManager	GetPresetsResponse.getReturn()

Methods in compbio.data.msa.jaxws with parameters of type PresetManager

Modifier and Type	Method and Description
void	GetPresetsResponse.setReturn(PresetManager _return)

Uses of PresetManager in compbio.engine.client

Methods in compbio.engine.client that return PresetManager

Modifier and Type	Method and Description
static <V> PresetManager<V>	ConfExecutable.getRunnerPresets(java.lang.Class<? extends Executable<V>> clazz)

Uses of PresetManager in compbio.metadata

Methods in compbio.metadata with parameters of type PresetManager

Modifier and Type	Method and Description
void	LimitsManager.validate(PresetManager<T> presets) Validate Limits

Uses of PresetManager in compbio.runner

Methods in compbio.runner that return PresetManager

Modifier and Type	Method and Description
static <T> PresetManager<T>	Util.getPresets(java.lang.Class<? extends Executable<T>> clazz)
static <T> PresetManager<T>	RunnerUtil.getPresets(java.lang.Class<? extends Executable<T>> clazz)

Uses of PresetManager in compbio.ws.client

Methods in compbio.ws.client that return PresetManager

Modifier and Type	Method and Description
(package private) static <T> PresetManager<T>	MetadataHelper.getPresetList(Metadata<T> msaws) Returns an objects from which the list of presets supported by web service can be obtained

Uses of PresetManager in compbio.ws.server

Fields in compbio.ws.server declared as PresetManager

Modifier and Type	Field and Description
private PresetManager<T>	GenericMetadataService.aaconPresets
private static PresetManager<ClustalO>	ClustalOWS.clustalPresets
private static PresetManager<ClustalW>	ClustalWS.clustalPresets
private static PresetManager<Mafft>	MafftWS.mafftPresets
private static PresetManager<Muscle>	MuscleWS.musclePresets
private static PresetManager<Tcoffee>	TcoffeeWS.tcoffeePresets

Methods in compbio.ws.server that return PresetManager

Modifier and Type	Method and Description
PresetManager<T>	GenericMetadataService.getPresets()
PresetManager<GLprobs>	GLprobsWS.getPresets()
PresetManager<Mafft>	MafftWS.getPresets()
PresetManager<ClustalO>	ClustalOWS.getPresets()
PresetManager<MSAprobs>	MSAprobsWS.getPresets()
PresetManager<Muscle>	MuscleWS.getPresets()
PresetManager<ClustalW>	ClustalWS.getPresets()
PresetManager<Tcoffee>	TcoffeeWS.getPresets()
PresetManager<Probcons>	ProbconsWS.getPresets()