compbio.ws.server

Class GenericMetadataService<T>

java.lang.Object

compbio.ws.server.GenericMetadataService<T>

Direct Known Subclasses:

SequenceAnnotationService

public abstract class GenericMetadataService<T>
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
private RunnerConfig<T>	aaconOptions
private PresetManager<T>	aaconPresets
private SkeletalExecutable<T>	exec
private LimitsManager<T>	limitMan
(package private) org.apache.log4j.Logger	log

Constructor Summary

Constructors

Constructor and Description
GenericMetadataService(SkeletalExecutable<T> exec, org.apache.log4j.Logger log)

Method Summary

Modifier and Type	Method and Description
boolean	cancelJob(java.lang.String jobId)
JobStatus	getJobStatus(java.lang.String jobId)
Limit<T>	getLimit(java.lang.String presetName)
LimitsManager<T>	getLimits()
PresetManager<T>	getPresets()
RunnerConfig<T>	getRunnerOptions()
(package private) ConfiguredExecutable<T>	init(java.util.List<FastaSequence> sequences)
ChunkHolder	pullExecStatistics(java.lang.String jobId, long position) Assume statistics is not supported

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

aaconOptions

private final RunnerConfig<T> aaconOptions

aaconPresets

private final PresetManager<T> aaconPresets

limitMan

private final LimitsManager<T> limitMan

exec

private SkeletalExecutable<T> exec

log

final org.apache.log4j.Logger log

Constructor Detail

GenericMetadataService

GenericMetadataService(SkeletalExecutable<T> exec,
                       org.apache.log4j.Logger log)

Method Detail

init

ConfiguredExecutable<T> init(java.util.List<FastaSequence> sequences)
                      throws JobSubmissionException

Throws:

JobSubmissionException

cancelJob

public boolean cancelJob(java.lang.String jobId)

getJobStatus

public JobStatus getJobStatus(java.lang.String jobId)

getLimit

public Limit<T> getLimit(java.lang.String presetName)

getLimits

public LimitsManager<T> getLimits()

getPresets

public PresetManager<T> getPresets()

getRunnerOptions

public RunnerConfig<T> getRunnerOptions()

pullExecStatistics

public ChunkHolder pullExecStatistics(java.lang.String jobId,
                                      long position)

Assume statistics is not supported

Parameters:

jobId -

position -

Returns:

ChunkHolder