Uses of Class
compbio.runner.msa.GLprobs

Packages that use GLprobs

Package	Description
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.ws.server

Uses of GLprobs in compbio.runner.msa

Methods in compbio.runner.msa that return GLprobs

Modifier and Type	Method and Description
GLprobs	GLprobs.setInput(java.lang.String inFile)

Methods in compbio.runner.msa that return types with arguments of type GLprobs

Modifier and Type	Method and Description
java.lang.Class<GLprobs>	GLprobs.getType()

Uses of GLprobs in compbio.ws.server

Fields in compbio.ws.server with type parameters of type GLprobs

Modifier and Type	Field and Description
private static RunnerConfig<GLprobs>	GLprobsWS.GLprobsOptions
private static LimitsManager<GLprobs>	GLprobsWS.limitMan

Methods in compbio.ws.server that return types with arguments of type GLprobs

Modifier and Type	Method and Description
Limit<GLprobs>	GLprobsWS.getLimit(java.lang.String presetName)
LimitsManager<GLprobs>	GLprobsWS.getLimits()
PresetManager<GLprobs>	GLprobsWS.getPresets()
RunnerConfig<GLprobs>	GLprobsWS.getRunnerOptions()
(package private) ConfiguredExecutable<GLprobs>	GLprobsWS.init(java.util.List<FastaSequence> dataSet)

Method parameters in compbio.ws.server with type arguments of type GLprobs

Modifier and Type	Method and Description
java.lang.String	GLprobsWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<GLprobs>> options)
java.lang.String	GLprobsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<GLprobs> preset)