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The JalView multiple alignment editor
and workbench.
JalView (1999) is a fast Java multiple alignment editor and analysis tool. It features many of the functions of AMAS,
for the analysis of sub-families and the prediction of functional sites, but is fully interactive.
See the JalView distribution page for more information and downloads.
See the embnet newsletter for an overview of the program. If you use JalView in your work, please cite the bioinformatics paper: Clamp et al, 2004.
JalView was developed originally by Michele Clamp who is now based at the Broad Institute and continues to be developed under the open source model. Recent significant work has been by Andrew Waterhouse and Jim Procter and funded by the UK BBSRC.
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