compbio.data.sequence
Class ScoreManager

java.lang.Object
  compbio.data.sequence.ScoreManager

public class ScoreManager
extends java.lang.Object

Nested Class Summary

static class

ScoreManager.ScoreHolder

Field Summary

static java.lang.String

SINGLE_ENTRY_KEY

Method Summary

java.util.Map<java.lang.String,java.util.TreeSet<Score>>	asMap()
java.util.Set<Score>	asSet()
boolean	equals(java.lang.Object obj)
ScoreManager.ScoreHolder	getAnnotationForSequence(java.lang.String seqId)
int	getNumberOfSeq()
int	hashCode()
static ScoreManager	newInstance(java.util.Map<java.lang.String,java.util.Set<Score>> data)
static ScoreManager	newInstanceSingleScore(java.util.Map<java.lang.String,Score> seqScoresMap)
static ScoreManager	newInstanceSingleSequence(java.util.Set<Score> data)
void	writeOut(java.io.Writer outStream)

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

SINGLE_ENTRY_KEY

public static final java.lang.String SINGLE_ENTRY_KEY

See Also:

Constant Field Values

Method Detail

newInstance

public static ScoreManager newInstance(java.util.Map<java.lang.String,java.util.Set<Score>> data)

newInstanceSingleScore

public static ScoreManager newInstanceSingleScore(java.util.Map<java.lang.String,Score> seqScoresMap)

newInstanceSingleSequence

public static ScoreManager newInstanceSingleSequence(java.util.Set<Score> data)

asMap

public java.util.Map<java.lang.String,java.util.TreeSet<Score>> asMap()

asSet

public java.util.Set<Score> asSet()

getNumberOfSeq

public int getNumberOfSeq()

getAnnotationForSequence

public ScoreManager.ScoreHolder getAnnotationForSequence(java.lang.String seqId)

writeOut

public void writeOut(java.io.Writer outStream)
              throws java.io.IOException

Throws:

java.io.IOException

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object