Uses of Class
compbio.data.sequence.ScoreManager

Packages that use ScoreManager

compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.data.sequence	A data model for multiple sequence alignment web services and utility methods that work on the objects of this model.
compbio.runner.conservation
compbio.runner.disorder
compbio.ws.server

Uses of ScoreManager in compbio.data.msa

Methods in compbio.data.msa that return ScoreManager

ScoreManager

SequenceAnnotation.getAnnotation(java.lang.String jobId) Return the result of the job.

Uses of ScoreManager in compbio.data.msa.jaxws

Methods in compbio.data.msa.jaxws that return ScoreManager

ScoreManager

GetAnnotationResponse.getReturn()

Methods in compbio.data.msa.jaxws with parameters of type ScoreManager

void	GetAnnotationResponse.setReturn(ScoreManager _return)

Uses of ScoreManager in compbio.data.sequence

Methods in compbio.data.sequence that return ScoreManager

static ScoreManager	ScoreManager.newInstance(java.util.Map<java.lang.String,java.util.Set<Score>> data)
static ScoreManager	ScoreManager.newInstanceSingleScore(java.util.Map<java.lang.String,Score> seqScoresMap)
static ScoreManager	ScoreManager.newInstanceSingleSequence(java.util.Set<Score> data)

Uses of ScoreManager in compbio.runner.conservation

Methods in compbio.runner.conservation that return ScoreManager

ScoreManager

AACon.getResults(java.lang.String workDirectory)

Uses of ScoreManager in compbio.runner.disorder

Methods in compbio.runner.disorder that return ScoreManager

ScoreManager	IUPred.getResults(java.lang.String workDirectory)
ScoreManager	Jronn.getResults(java.lang.String workDirectory)
ScoreManager	Disembl.getResults(java.lang.String workDirectory)
ScoreManager	GlobPlot.getResults(java.lang.String workDirectory)

Uses of ScoreManager in compbio.ws.server

Methods in compbio.ws.server that return ScoreManager

ScoreManager	SequenceAnnotationService.getAnnotation(java.lang.String jobId)
static <T> ScoreManager	WSUtil.getAnnotation(java.lang.String jobId, org.apache.log4j.Logger log)