compbio.runner.disorder
Class GlobPlot
java.lang.Object
compbio.engine.client.SkeletalExecutable<GlobPlot>
compbio.runner.disorder.GlobPlot
- All Implemented Interfaces:
- Executable<GlobPlot>, PipedExecutable<GlobPlot>
public class GlobPlot
- extends SkeletalExecutable<GlobPlot>
- implements PipedExecutable<GlobPlot>
./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame
FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file'
Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file'
Hard-coded values are 10 15 74 4 5.
Changing these values are not recommended by developers, apart from smoothing
window. However, the binary, GlobPlot depends on - Tisean which is not happy
with arbitrary changes to these values, so changing them can lead to
problems. May be we can offer preset?
This is not a standard GlobPlot! The script has been modified!
Methods inherited from class compbio.engine.client.SkeletalExecutable |
addParameters, equals, getClusterCpuNum, getClusterJobSettings, getCreatedFiles, getError, getInput, getLimit, getLimits, getOutput, getParameters, hashCode, loadRunConfiguration, setError, setOutput, setParameter, toString |
Methods inherited from class java.lang.Object |
getClass, notify, notifyAll, wait, wait, wait |
KEY_VALUE_SEPARATOR
public static final java.lang.String KEY_VALUE_SEPARATOR
- See Also:
- Constant Field Values
GlobPlot
public GlobPlot()
getResults
public ScoreManager getResults(java.lang.String workDirectory)
throws ResultNotAvailableException
- Specified by:
getResults
in interface Executable<GlobPlot>
- Throws:
ResultNotAvailableException
setInput
public GlobPlot setInput(java.lang.String inFile)
- Overrides:
setInput
in class SkeletalExecutable<GlobPlot>
getType
public java.lang.Class<GlobPlot> getType()
- Specified by:
getType
in class SkeletalExecutable<GlobPlot>
- Returns:
- subclasses must return their type