compbio.runner.disorder
Class IUPred

java.lang.Object
  compbio.engine.client.SkeletalExecutable<IUPred>
      compbio.runner.disorder.IUPred

All Implemented Interfaces:

Executable<IUPred>

public class IUPred
extends SkeletalExecutable<IUPred>

iupred sequenceFile Maximum sequence length is 40000 chars. Single string length max is a 1000 chars!

Nested Class Summary

Nested classes/interfaces inherited from interface compbio.engine.client.Executable

Executable.ExecProvider

Field Summary

Fields inherited from class compbio.engine.client.SkeletalExecutable

ERROR, INPUT, OUTPUT

Constructor Summary

IUPred()

Method Summary

java.lang.String	getOutput()
ScoreManager	getResults(java.lang.String workDirectory)
java.lang.Class<IUPred>	getType()
IUPred	setInput(java.lang.String inFile)
IUPred	setOutput(java.lang.String outFile)

Methods inherited from class compbio.engine.client.SkeletalExecutable

addParameters, equals, getClusterCpuNum, getClusterJobSettings, getCreatedFiles, getError, getInput, getLimit, getLimits, getParameters, hashCode, loadRunConfiguration, setError, setParameter, toString

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

IUPred

public IUPred()

Method Detail

getResults

public ScoreManager getResults(java.lang.String workDirectory)
                        throws ResultNotAvailableException

Throws:

ResultNotAvailableException

setInput

public IUPred setInput(java.lang.String inFile)

Overrides:

setInput in class SkeletalExecutable<IUPred>

setOutput

public IUPred setOutput(java.lang.String outFile)

Overrides:

setOutput in class SkeletalExecutable<IUPred>

getOutput

public java.lang.String getOutput()

Specified by:

getOutput in interface Executable<IUPred>

Overrides:

getOutput in class SkeletalExecutable<IUPred>

getType

public java.lang.Class<IUPred> getType()

Specified by:

getType in class SkeletalExecutable<IUPred>

Returns:

subclasses must return their type