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Hierarchy For All Packages
Package Hierarchies:
compbio.data.msa
,
compbio.data.msa.jaxws
,
compbio.data.sequence
,
compbio.engine
,
compbio.engine.client
,
compbio.engine.cluster.drmaa
,
compbio.engine.conf
,
compbio.engine.local
,
compbio.metadata
,
compbio.runner
,
compbio.runner.conservation
,
compbio.runner.disorder
,
compbio.runner.msa
,
compbio.stat.collector
,
compbio.stat.servlet
,
compbio.stat.servlet.util
,
compbio.ws.client
,
compbio.ws.server
Class Hierarchy
java.lang.Object
compbio.ws.client.
AAConClient
java.util.concurrent.AbstractExecutorService (implements java.util.concurrent.ExecutorService)
java.util.concurrent.ThreadPoolExecutor
compbio.engine.local.
LocalExecutorService
compbio.data.msa.jaxws.
Align
compbio.data.sequence.
Alignment
compbio.data.sequence.
AlignmentMetadata
compbio.data.msa.jaxws.
AlignResponse
compbio.data.msa.jaxws.
Analize
compbio.data.msa.jaxws.
AnalizeResponse
compbio.engine.cluster.drmaa.
AsyncJobRunner
(implements compbio.engine.
AsyncExecutor
)
compbio.engine.local.
AsyncLocalRunner
(implements compbio.engine.
AsyncExecutor
)
compbio.data.msa.jaxws.
CancelJob
compbio.data.msa.jaxws.
CancelJobResponse
compbio.data.msa.
Category
compbio.metadata.
ChunkHolder
compbio.engine.
Cleaner
compbio.data.sequence.
ClustalAlignmentUtil
compbio.ws.server.
ClustalOWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.ws.server.
ClustalWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.engine.
ClusterJobId
compbio.engine.cluster.drmaa.
ClusterSession
compbio.engine.cluster.drmaa.
ClusterUtil
compbio.engine.client.
CommandBuilder
<T>
compbio.engine.client.
ConfExecutable
<T> (implements compbio.engine.client.
ConfiguredExecutable
<T>)
compbio.engine.
Configurator
compbio.data.msa.jaxws.
CustomAlign
compbio.data.msa.jaxws.
CustomAlignResponse
compbio.data.msa.jaxws.
CustomAnalize
compbio.data.msa.jaxws.
CustomAnalizeResponse
compbio.engine.conf.
DirectoryManager
compbio.engine.client.
EnvVariableProcessor
compbio.engine.local.
ExecutableWrapper
(implements java.util.concurrent.Callable<V>)
compbio.stat.collector.
ExecutionStatCollector
(implements java.lang.Runnable)
compbio.data.sequence.
FastaReader
(implements java.util.Iterator<E>)
compbio.data.sequence.
FastaSequence
compbio.engine.
FilePuller
(implements java.util.concurrent.Delayed)
compbio.ws.server.
GAUtils
compbio.ws.server.
GenericMetadataService
<T>
compbio.ws.server.
SequenceAnnotationService
<T>
compbio.ws.server.
AAConWS
(implements compbio.data.msa.
SequenceAnnotation
<T>)
compbio.ws.server.
DisemblWS
(implements compbio.data.msa.
SequenceAnnotation
<T>)
compbio.ws.server.
GlobPlotWS
(implements compbio.data.msa.
SequenceAnnotation
<T>)
compbio.ws.server.
IUPredWS
(implements compbio.data.msa.
SequenceAnnotation
<T>)
compbio.ws.server.
JronnWS
(implements compbio.data.msa.
SequenceAnnotation
<T>)
javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
javax.servlet.http.HttpServlet (implements java.io.Serializable)
compbio.stat.servlet.
AnnualStat
compbio.stat.servlet.
DisplayStat
compbio.stat.servlet.
DownloadRedirector
compbio.stat.servlet.
HttpCodeResponseServiceStatus
compbio.stat.servlet.
Joblist
compbio.stat.servlet.
ServiceStatus
compbio.data.msa.jaxws.
GetAnnotation
compbio.data.msa.jaxws.
GetAnnotationResponse
compbio.data.msa.jaxws.
GetJobStatus
compbio.data.msa.jaxws.
GetJobStatusResponse
compbio.data.msa.jaxws.
GetLastTested
compbio.data.msa.jaxws.
GetLastTestedOn
compbio.data.msa.jaxws.
GetLastTestedOnResponse
compbio.data.msa.jaxws.
GetLastTestedResponse
compbio.data.msa.jaxws.
GetLimit
compbio.data.msa.jaxws.
GetLimitResponse
compbio.data.msa.jaxws.
GetLimits
compbio.data.msa.jaxws.
GetLimitsResponse
compbio.data.msa.jaxws.
GetPresets
compbio.data.msa.jaxws.
GetPresetsResponse
compbio.data.msa.jaxws.
GetResult
compbio.data.msa.jaxws.
GetResultResponse
compbio.data.msa.jaxws.
GetRunnerOptions
compbio.data.msa.jaxws.
GetRunnerOptionsResponse
compbio.data.msa.jaxws.
GetServiceCategories
compbio.data.msa.jaxws.
GetServiceCategoriesResponse
compbio.data.msa.jaxws.
GetServiceDescription
compbio.data.msa.jaxws.
GetServiceDescriptionResponse
compbio.data.msa.jaxws.
GetSupportedServices
compbio.data.msa.jaxws.
GetSupportedServicesResponse
compbio.stat.collector.
InputFilter
compbio.ws.client.
IOHelper
compbio.data.msa.jaxws.
IsOperating
compbio.data.msa.jaxws.
IsOperatingResponse
compbio.engine.
Job
compbio.engine.cluster.drmaa.
JobRunner
(implements compbio.engine.
SyncExecutor
)
compbio.stat.collector.
JobStat
compbio.data.msa.jaxws.
JobSubmissionExceptionBean
compbio.ws.client.
Jws2Client
compbio.metadata.
Limit
<T>
compbio.data.msa.jaxws.
LimitExceededExceptionBean
compbio.metadata.
LimitsManager
<T>
compbio.engine.
LoadBalancer
compbio.engine.local.
LocalEngineUtil
compbio.engine.local.
LocalRunner
(implements compbio.engine.
SyncExecutor
)
compbio.ws.server.
MafftWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.ws.client.
MetadataHelper
compbio.ws.server.
MuscleWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.metadata.
Option
<T> (implements compbio.metadata.
Argument
<T>)
compbio.metadata.
Parameter
<T>
compbio.runner.
OptionCombinator
compbio.engine.client.
PathValidator
compbio.metadata.
Preset
<T>
compbio.data.msa.jaxws.
PresetAlign
compbio.data.msa.jaxws.
PresetAlignResponse
compbio.data.msa.jaxws.
PresetAnalize
compbio.data.msa.jaxws.
PresetAnalizeResponse
compbio.metadata.
PresetManager
<T>
compbio.ws.server.
ProbconsWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.engine.
ProgressGetter
compbio.engine.conf.
PropertyHelperManager
compbio.engine.
PulledFileCache
compbio.data.msa.jaxws.
PullExecStatistics
compbio.data.msa.jaxws.
PullExecStatisticsResponse
compbio.data.sequence.
Range
(implements java.lang.Comparable<T>)
compbio.ws.server.
RegistryWS
(implements compbio.data.msa.
JABAService
, compbio.data.msa.
RegistryWS
)
compbio.data.msa.jaxws.
ResultNotAvailableExceptionBean
compbio.engine.client.
RunConfiguration
compbio.metadata.
RunnerConfig
<T>
compbio.engine.conf.
RunnerConfigMarshaller
<T>
compbio.data.sequence.
Score
(implements java.lang.Comparable<T>)
compbio.data.sequence.
ScoreManager
compbio.data.sequence.
ScoreManager.ScoreHolder
compbio.data.sequence.
SequenceUtil
compbio.ws.client.
ServicesUtil
compbio.stat.servlet.
ServiceTestResult
compbio.ws.server.
SetExecutableFlag
(implements javax.servlet.ServletContextListener)
compbio.ws.server.
ShutdownEngines
(implements javax.servlet.ServletContextListener)
compbio.ws.server.
SimpleWSPublisher
compbio.engine.client.
SkeletalExecutable
<T> (implements compbio.engine.client.
Executable
<T>)
compbio.runner.conservation.
AACon
compbio.runner.msa.
ClustalO
compbio.runner.msa.
ClustalW
compbio.runner.disorder.
Disembl
(implements compbio.engine.client.
PipedExecutable
<T>)
compbio.runner.disorder.
GlobPlot
(implements compbio.engine.client.
PipedExecutable
<T>)
compbio.runner.disorder.
IUPred
compbio.runner.disorder.
Jronn
compbio.runner.msa.
Mafft
(implements compbio.engine.client.
PipedExecutable
<T>)
compbio.runner.msa.
Muscle
compbio.runner.msa.
Probcons
(implements compbio.engine.client.
PipedExecutable
<T>)
compbio.runner.msa.
Tcoffee
(implements compbio.engine.client.
PipedExecutable
<T>)
compbio.stat.servlet.util.
StatCollection
compbio.stat.collector.
StatDB
compbio.stat.servlet.
StatisticCollector
(implements javax.servlet.ServletContextListener)
compbio.engine.cluster.drmaa.
StatisticManager
compbio.stat.collector.
StatProcessor
compbio.engine.local.
StreamGobbler
(implements java.lang.Runnable)
compbio.engine.
SubmissionManager
compbio.ws.server.
TcoffeeWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.data.msa.jaxws.
TestAllServices
compbio.data.msa.jaxws.
TestAllServicesResponse
compbio.data.msa.jaxws.
TestService
compbio.data.msa.jaxws.
TestServiceResponse
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
compbio.metadata.
JobExecutionException
compbio.metadata.
JobSubmissionException
compbio.metadata.
LimitExceededException
compbio.metadata.
UnsupportedRuntimeException
compbio.metadata.
ResultNotAvailableException
compbio.data.sequence.
UnknownFileFormatException
compbio.metadata.
WrongParameterException
compbio.stat.servlet.util.
Totals
compbio.data.msa.jaxws.
UnsupportedRuntimeExceptionBean
compbio.engine.client.
Util
compbio.runner.
Util
compbio.metadata.
ValueConstrain
compbio.data.msa.jaxws.
WrongParameterExceptionBean
compbio.ws.client.
WSTester
compbio.ws.server.
WSUtil
Interface Hierarchy
compbio.metadata.
Argument
<T>
compbio.engine.
AsyncExecutor
compbio.engine.client.
Executable
<T>
compbio.engine.client.
ConfiguredExecutable
<T> (also extends compbio.engine.client.
PipedExecutable
<T>)
compbio.engine.client.
PipedExecutable
<T>
compbio.engine.client.
ConfiguredExecutable
<T> (also extends compbio.engine.client.
Executable
<T>)
compbio.data.msa.
JABAService
compbio.data.msa.
MsaWS
<T> (also extends compbio.data.msa.
JManagement
, compbio.data.msa.
Metadata
<T>)
compbio.data.msa.
RegistryWS
compbio.data.msa.
SequenceAnnotation
<T> (also extends compbio.data.msa.
JManagement
, compbio.data.msa.
Metadata
<T>)
compbio.data.msa.
JManagement
compbio.data.msa.
MsaWS
<T> (also extends compbio.data.msa.
JABAService
, compbio.data.msa.
Metadata
<T>)
compbio.data.msa.
SequenceAnnotation
<T> (also extends compbio.data.msa.
JABAService
, compbio.data.msa.
Metadata
<T>)
compbio.data.msa.
Metadata
<T>
compbio.data.msa.
MsaWS
<T> (also extends compbio.data.msa.
JABAService
, compbio.data.msa.
JManagement
)
compbio.data.msa.
SequenceAnnotation
<T> (also extends compbio.data.msa.
JABAService
, compbio.data.msa.
JManagement
)
compbio.engine.
SyncExecutor
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
compbio.data.sequence.
Program
compbio.engine.client.
Executable.ExecProvider
compbio.stat.servlet.util.
StatCollection.Stattype
compbio.ws.client.
Services
compbio.metadata.
JobStatus
compbio.metadata.
ValueConstrain.Type
compbio.data.sequence.
DisorderMethod
compbio.data.sequence.
ConservationMethod
compbio.data.sequence.
SMERFSConstraints
Overview
Package
Class
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Deprecated
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