compbio.runner.conservation
Class AACon
java.lang.Object
compbio.engine.client.SkeletalExecutable<AACon>
compbio.runner.conservation.AACon
- All Implemented Interfaces:
- Executable<AACon>
public class AACon
- extends SkeletalExecutable<AACon>
Command line
java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out
- Author:
- pvtroshin
Constructor Summary |
AACon()
|
Methods inherited from class compbio.engine.client.SkeletalExecutable |
addParameters, equals, getClusterCpuNum, getClusterJobSettings, getError, getInput, getLimit, getLimits, getOutput, hashCode, loadRunConfiguration, setError, setParameter, toString |
Methods inherited from class java.lang.Object |
getClass, notify, notifyAll, wait, wait, wait |
KEY_VALUE_SEPARATOR
public static final java.lang.String KEY_VALUE_SEPARATOR
- See Also:
- Constant Field Values
STAT_FILE
public static final java.lang.String STAT_FILE
- See Also:
- Constant Field Values
AACon
public AACon()
getResults
public ScoreManager getResults(java.lang.String workDirectory)
throws ResultNotAvailableException
- Throws:
ResultNotAvailableException
getCreatedFiles
public java.util.List<java.lang.String> getCreatedFiles()
- Description copied from class:
SkeletalExecutable
- This method cannot really tell whether the files has actually been
created or not. It must be overridden as required.
- Specified by:
getCreatedFiles
in interface Executable<AACon>
- Overrides:
getCreatedFiles
in class SkeletalExecutable<AACon>
- See Also:
Executable.getCreatedFiles()
setInput
public AACon setInput(java.lang.String inFile)
- Overrides:
setInput
in class SkeletalExecutable<AACon>
setOutput
public AACon setOutput(java.lang.String outFile)
- Overrides:
setOutput
in class SkeletalExecutable<AACon>
getType
public java.lang.Class<AACon> getType()
- Specified by:
getType
in class SkeletalExecutable<AACon>
- Returns:
- subclasses must return their type
getStatFile
public static java.lang.String getStatFile()
setNCore
public void setNCore(int ncoreNumber)
getParameters
public CommandBuilder<AACon> getParameters(Executable.ExecProvider provider)
- Specified by:
getParameters
in interface Executable<AACon>
- Overrides:
getParameters
in class SkeletalExecutable<AACon>