Uses of Class
compbio.metadata.Limit

Packages that use Limit

compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.engine.client
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.ws.server

Uses of Limit in compbio.data.msa

Methods in compbio.data.msa that return Limit

Limit<T>

Metadata.getLimit(java.lang.String presetName) Get a Limit for a preset.

Uses of Limit in compbio.data.msa.jaxws

Methods in compbio.data.msa.jaxws that return Limit

Limit

GetLimitResponse.getReturn()

Methods in compbio.data.msa.jaxws with parameters of type Limit

void	GetLimitResponse.setReturn(Limit _return)

Uses of Limit in compbio.engine.client

Methods in compbio.engine.client that return Limit

Limit<T>	Executable.getLimit(java.lang.String presetName)
Limit<T>	ConfExecutable.getLimit(java.lang.String presetName)
Limit<T>	SkeletalExecutable.getLimit(java.lang.String presetName)

Uses of Limit in compbio.metadata

Methods in compbio.metadata that return Limit

Limit<T>	LimitsManager.getDefaultLimit()
Limit<T>	LimitsManager.getLimitByName(java.lang.String presetName)

Methods in compbio.metadata that return types with arguments of type Limit

java.util.List<Limit<T>>

LimitsManager.getLimits()

Methods in compbio.metadata with parameters of type Limit

static LimitExceededException

LimitExceededException.newLimitExceeded(Limit<?> limit, java.util.List<FastaSequence> seqs)

Uses of Limit in compbio.ws.server

Methods in compbio.ws.server that return Limit

Limit<Mafft>	MafftWS.getLimit(java.lang.String presetName)
Limit<ClustalO>	ClustalOWS.getLimit(java.lang.String presetName)
Limit<Probcons>	ProbconsWS.getLimit(java.lang.String presetName)
Limit<Tcoffee>	TcoffeeWS.getLimit(java.lang.String presetName)
Limit<ClustalW>	ClustalWS.getLimit(java.lang.String presetName)
Limit<T>	GenericMetadataService.getLimit(java.lang.String presetName)
Limit<Muscle>	MuscleWS.getLimit(java.lang.String presetName)

Methods in compbio.ws.server with parameters of type Limit

static <T> java.lang.String	WSUtil.align(java.util.List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger logger, java.lang.String callingMethod, Limit<T> limit)
static <T> java.lang.String	WSUtil.analize(java.util.List<FastaSequence> sequences, ConfiguredExecutable<T> confExec, org.apache.log4j.Logger log, java.lang.String method, Limit<T> limit)